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Journal Articles
- 2013
[j6]Andrew J. Sedgewick, Stephen C. Benz
, Shahrooz Rabizadeh, Patrick Soon-Shiong, Charles J. Vaske:
Learning subgroup-specific regulatory interactions and regulator independence with PARADIGM. Bioinform. 29(13): 62-70 (2013)- [j5]Christopher K. Wong, Charles J. Vaske, Sam Ng, J. Zachary Sanborn, Stephen C. Benz, David Haussler, Joshua M. Stuart:
The UCSC Interaction Browser: multidimensional data views in pathway context. Nucleic Acids Res. 41(Webserver-Issue): 218-224 (2013) - 2012
- [j4]Vinay Varadan, Prateek Mittal, Charles J. Vaske, Stephen C. Benz:
The Integration of Biological Pathway Knowledge in Cancer Genomics: A review of existing computational approaches. IEEE Signal Process. Mag. 29(1): 35-50 (2012) - 2011
- [j3]J. Zachary Sanborn, Stephen C. Benz, Brian Craft, Christopher Szeto, Kord M. Kober, Laurence R. Meyer, Charles J. Vaske, Mary Goldman, Kayla E. Smith, Robert M. Kuhn, Donna Karolchik, W. James Kent, Joshua M. Stuart, David Haussler, Jingchun Zhu:
The UCSC cancer genomics browser: update 2011. Nucleic Acids Res. 39(Database-Issue): 951-959 (2011) - 2010
- [j2]Charles J. Vaske, Stephen C. Benz, J. Zachary Sanborn, Dent Earl, Christopher Szeto, Jingchun Zhu, David Haussler, Joshua M. Stuart:
Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM. Bioinform. 26(12): 237-245 (2010) - 2009
- [j1]Charles J. Vaske, Carrie House, Truong Luu, Bryan Frank, Chen-Hsiang Yeang, Norman H. Lee, Joshua M. Stuart:
A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations. PLoS Comput. Biol. 5(1) (2009)
Conference and Workshop Papers
- 2009
- [c1]Pinal N. Kanabar, Charles J. Vaske, Chen-Hsiang Yeang, Fitnat H. Yildiz, Joshua M. Stuart:
Inferring Disease-Related Pathways Using A Probabilistic Epistasis Model. Pacific Symposium on Biocomputing 2009: 480-491
Coauthor Index
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