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2010 – 2019
- 2018
[j12]Pawel Krupa, Anna Halabis, Wioletta Zmudzinska, Stanislaw Oldziej, Harold A. Scheraga
, Adam Liwo:
Correction to Maximum Likelihood Calibration of the UNRES Force Field for Simulation of Protein Structure and Dynamics. J. Chem. Inf. Model. 58(1): 206 (2018)- 2017
- [j11]Pawel Krupa, Anna Halabis, Wioletta Zmudzinska, Stanislaw Oldziej, Harold A. Scheraga, Adam Liwo:
Maximum Likelihood Calibration of the UNRES Force Field for Simulation of Protein Structure and Dynamics. J. Chem. Inf. Model. 57(9): 2364-2377 (2017) - 2015
- [j10]Bartlomiej Zaborowski, Dawid Jagiela, Cezary Czaplewski, Anna Halabis, Agnieszka Lewandowska, Wioletta Zmudzinska, Stanislaw Oldziej, Agnieszka S. Karczynska, Christian Omieczynski, Tomasz K. Wirecki, Adam Liwo:
A Maximum-Likelihood Approach to Force-Field Calibration. J. Chem. Inf. Model. 55(9): 2050-2070 (2015) - 2010
- [c3]Stanislaw Oldziej, Cezary Czaplewski, Adam Liwo, Harold A. Scheraga:
Towards Temperature Dependent Coarse-grained Potential of Side-chain Interactions for Protein Folding Simulations. BIBE 2010: 263-266
2000 – 2009
- 2006
- [j9]Maurizio Chinchio, Cezary Czaplewski, Stanislaw Oldziej, Harold A. Scheraga:
A Hierarchical Multiscale Approach to Protein Structure Prediction: Production of Low-Resolution Packing Arrangements of Helices and Refinement of the Best Models with a United-Residue Force Field. Multiscale Model. Simul. 5(4): 1175-1195 (2006) - [c2]Roman Wyrzykowski, Norbert Meyer, Tomasz Olas, Lukasz Kuczynski, Bogdan Ludwiczak, Cezary Czaplewski, Stanislaw Oldziej:
Meta-computations on the CLUSTERIX Grid. PARA 2006: 489-500 - 2005
- [j8]Marian Nanias, Maurizio Chinchio, Stanislaw Oldziej, Cezary Czaplewski, Harold A. Scheraga:
Protein structure prediction with the UNRES force-field using Replica-Exchange Monte Carlo-with-Minimization; Comparison with MCM, CSA, and CFMC. J. Comput. Chem. 26(14): 1472-1486 (2005) - 2002
- [j7]Maciej Bobrowski, Adam Liwo, Stanislaw Oldziej, Danuta Jeziorek, Tadeusz Ossowski:
Ab initio study of the mechanism of singlet-dioxygen addition to hydroxyaromatic compounds: Negative evidence for the involvement of peroxa and endoperoxide intermediates. J. Comput. Chem. 23(11): 1076-1089 (2002) - 2000
- [j6]Edyta Wozniak, Stanislaw Oldziej, Jerzy Ciarkowski:
Molecular Modeling of the Catalytic Domain of Serine/threonine Phosphatase-1with the Zn2+ and Mn2+ Di-nuclear Ion Centers in the Active Site. Comput. Chem. 24(3-4): 381-390 (2000) - [c1]Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga:
UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms. RECOMB 2000: 193-200
1990 – 1999
- 1998
- [j5]Adam Liwo, Rajmund Kazmierkiewicz, Cezary Czaplewski, Malgorzata Groth, Stanislaw Oldziej, Ryszard J. Wawak, Shelly Rackovsky, Matthew R. Pincus, Harold A. Scheraga:
United-residue force field for off-lattice protein-structure simulations: III. Origin of backbone hydrogen-bonding cooperativity in united-residue potentials. J. Comput. Chem. 19(3): 259-276 (1998) - 1997
- [j4]Adam Liwo, Piotr Skurski, Stanislaw Oldziej, Leszek Lankiewicz, Joanna Malicka, Wieslaw Wiczk:
A New Approach to the Resolution of the Excitation-emission Spectra of Multicomponent Systems. Comput. Chem. 21(2): 89-95 (1997) - [j3]Adam Liwo, Stanislaw Oldziej, Matthew R. Pincus, Ryszard J. Wawak, Shelly Rackovsky, Harold A. Scheraga:
A united-residue force field for off-lattice protein-structure simulations. I. Functional forms and parameters of long-range side-chain interaction potentials from protein crystal data. J. Comput. Chem. 18(7): 849-873 (1997) - [j2]Adam Liwo, Matthew R. Pincus, Ryszard J. Wawak, Shelly Rackovsky, Stanislaw Oldziej, Harold A. Scheraga:
A united-residue force field for off-lattice protein-structure simulations. II. Parameterization of short-range interactions and determination of weights of energy terms by Z-score optimization. J. Comput. Chem. 18(7): 874-887 (1997) - 1996
- [j1]Stanislaw Oldziej, Jerzy Ciarkowski:
Mechanism of action of aspartic proteinases: Application of transition-state analogue theory. J. Comput. Aided Mol. Des. 10(6): 583-588 (1996)
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