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Lizhen Shi

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2020 – today

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2024
[i2]
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  - journals/corr/abs-2402-08777
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Zhihan Zhou, Weimin Wu, Harrison Ho, Jiayi Wang, Lizhen Shi, Ramana V. Davuluri, Zhong Wang, Han Liu:
DNABERT-S: Learning Species-Aware DNA Embedding with Genome Foundation Models. CoRR abs/2402.08777 (2024)
2021
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  - conf/bcb/ShiC21
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Lizhen Shi, Bo Chen:
LSHvec: a vector representation of DNA sequences using locality sensitive hashing and FastText word embeddings. BCB 2021: 30:1-30:10
2020
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  - journals/corr/abs-2005-04806
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Lizhen Shi, Bo Chen:
Comparison and Benchmark of Graph Clustering Algorithms. CoRR abs/2005.04806 (2020)

2010 – 2019

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2019
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  - journals/bioinformatics/ShiMTMW19
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Lizhen Shi, Xiandong Meng, Elizabeth Tseng, Michael Mascagni, Zhong Wang:
SpaRC: scalable sequence clustering using Apache Spark. Bioinform. 35(5): 760-768 (2019)
2017
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  - journals/pc/ShiWYM17
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Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng:
A case study of tuning MapReduce for efficient Bioinformatics in the cloud. Parallel Comput. 61: 83-95 (2017)
2015
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  - conf/sc/ShiWYM15
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Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng:
Performance evaluation and tuning of BioPig for genomic analysis. DISCS@SC 2015: 9:1-9:7

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