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2020 – today
- 2024
[c7]Alan M. Cleary
, Joseph Winjum, Jordan Dood, Shunsuke Inenaga:
Revisiting the Folklore Algorithm for Random Access to Grammar-Compressed Strings. SPIRE 2024: 88-101- [i2]Alan M. Cleary, Joseph Winjum, Jordan Dood, Shunsuke Inenaga:
Revisiting the Folklore Algorithm for Random Access to Grammar-Compressed Strings. CoRR abs/2407.08190 (2024) - [i1]Alan M. Cleary, Joseph Winjum, Jordan Dood, Shunsuke Inenaga:
The CDAWG Index and Pattern Matching on Grammar-Compressed Strings. CoRR abs/2407.08826 (2024) - 2023
- [j5]Alan M. Cleary, Andrew D. Farmer:
Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes. Nucleic Acids Res. 51(W1): 225-231 (2023) - [c6]Indika Kahanda, Buwani Manuweera, Brendan Mumey, Thiruvarangan Ramaraj, Alan M. Cleary, Joann Mudge:
Genotype-to-Phenotype Associations with Frequented Region Variants. BIBM 2023: 114-119 - [c5]Alan M. Cleary, Jordan Dood:
Constructing the CDAWG CFG using LCP-Intervals. DCC 2023: 178-187 - 2022
- [j4]Éloi Durant, Mathieu Rouard, Eric W. Ganko, Cédric Muller, Alan M. Cleary, Andrew D. Farmer, Matthieu G. Conte, François Sabot:
Ten simple rules for developing visualization tools in genomics. PLoS Comput. Biol. 18(11): 1010622 (2022)
2010 – 2019
- 2019
- [j3]Alan M. Cleary, Thiruvarangan Ramaraj, Indika Kahanda, Joann Mudge, Brendan Mumey:
Exploring Frequented Regions in Pan-Genomic Graphs. IEEE ACM Trans. Comput. Biol. Bioinform. 16(5): 1424-1435 (2019) - [c4]Buwani Manuweera, Joann Mudge, Indika Kahanda, Brendan Mumey, Thiruvarangan Ramaraj, Alan M. Cleary:
Poster: Pangenome-Wide Association Studies with Frequented Regions. BCB 2019: 537 - [c3]Buwani Manuweera, Joann Mudge, Indika Kahanda, Brendan Mumey, Thiruvarangan Ramaraj, Alan M. Cleary:
Pangenome-Wide Association Studies with Frequented Regions. BCB 2019: 627-632 - 2018
- [j2]Alan M. Cleary, Andrew D. Farmer:
Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny. Bioinform. 34(9): 1562-1564 (2018) - 2017
- [c2]Alan M. Cleary, Indika Kahanda, Brendan Mumey, Joann Mudge, Thiruvarangan Ramaraj:
Exploring Frequented Regions in Pan-Genomic Graphs. BCB 2017: 89-97 - 2016
- [j1]Sudhansu Dash, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Alan M. Cleary, Wei Huang, Scott R. Kalberer, Vijay Karingula, Alex G. Rice, Jugpreet Singh, Pooja E. Umale, Nathan T. Weeks, Andrew P. Wilkey, Andrew D. Farmer, Steven B. Cannon:
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. Nucleic Acids Res. 44(Database-Issue): 1181-1188 (2016) - 2015
- [c1]Alan M. Cleary, Lucas Vandenbergh, John Peterson:
Reactive Game Engine Programming for STEM Outreach. SIGCSE 2015: 628-632
Coauthor Index
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