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Books and Theses
- 2017
[b2]Joe Pitt-Francis, Jonathan P. Whiteley:
Guide to Scientific Computing in C++, Second Edition. Undergraduate Topics in Computer Science, Springer 2017, ISBN 978-3-319-73131-5, pp. 1-244- 2012
- [b1]Joe Pitt-Francis, Jonathan P. Whiteley:
Guide to Scientific Computing in C++. Undergraduate Topics in Computer Science, Springer 2012, ISBN 978-1-4471-2735-2, pp. I-XII, 1-250
Journal Articles
- 2024
- [j17]Jakub Köry
, Vedang Narain, Bernadette J. Stolz, Jakob Kaeppler, Bostjan Markelc, Ruth J. Muschel, Philip K. Maini, Joe Pitt-Francis, Helen M. Byrne:
Enhanced perfusion following exposure to radiotherapy: A theoretical investigation. PLoS Comput. Biol. 20(2) (2024) - 2020
- [j16]Thomas Pak, Ruth E. Baker, Joe Pitt-Francis:
Pakman: a modular, efficient and portable tool for approximate Bayesian inference. J. Open Source Softw. 5(47): 1716 (2020) - [j15]Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan:
Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. 5(47): 1848 (2020) - 2018
- [j14]James A. Grogan, Anthony J. Connor, Joe Pitt-Francis, Philip K. Maini, Helen M. Byrne:
The importance of geometry in the corneal micropocket angiogenesis assay. PLoS Comput. Biol. 14(3) (2018) - 2017
- [j13]James M. Osborne, Alexander G. Fletcher, Joe Pitt-Francis, Philip K. Maini, David J. Gavaghan:
Comparing individual-based approaches to modelling the self-organization of multicellular tissues. PLoS Comput. Biol. 13(2) (2017) - [j12]James A. Grogan, Bostjan Markelc, Anthony J. Connor, Ruth J. Muschel, Joe Pitt-Francis, Philip K. Maini, Helen M. Byrne:
Predicting the Influence of Microvascular Structure On Tumor Response to Radiotherapy. IEEE Trans. Biomed. Eng. 64(3): 504-511 (2017) - 2015
- [j11]Daniel G. Harvey, Alexander G. Fletcher, James M. Osborne, Joe Pitt-Francis:
A parallel implementation of an off-lattice individual-based model of multicellular populations. Comput. Phys. Commun. 192: 130-137 (2015) - [j10]Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane:
Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. 11(4) (2015) - 2014
- [j9]Miguel O. Bernabeu, James Southern, Nicholas Wilson, Peter E. Strazdins, Jonathan Cooper, Joe Pitt-Francis:
Chaste: A case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation. Int. J. High Perform. Comput. Appl. 28(1): 13-32 (2014) - [j8]James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane:
Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. 10(3) (2014) - 2013
- [j7]Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan:
Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. 9(3) (2013) - 2010
- [j6]James Southern, Gerard J. Gorman, M. D. Piggott, Patrick E. Farrell, Miguel O. Bernabeu, Joe Pitt-Francis:
Simulating cardiac electrophysiology using anisotropic mesh adaptivity. J. Comput. Sci. 1(2): 82-88 (2010) - [j5]Miguel O. Bernabeu, Pras Pathmanathan, Joe Pitt-Francis, David Kay:
Stimulus Protocol Determines the Most Computationally Efficient Preconditioner for the Bidomain Equations. IEEE Trans. Biomed. Eng. 57(12): 2806-2815 (2010) - 2009
- [j4]Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan:
Chaste: A test-driven approach to software development for biological modelling. Comput. Phys. Commun. 180(12): 2452-2471 (2009) - 2007
- [j3]Sharon Lloyd, David Gavaghan, Andrew Simpson, Matthew Mascord, Clint Seneurine, Geoff Williams, Joe Pitt-Francis, David R. S. Boyd, Damian Mac Randal, Lakshmi Sastry:
Integrative Biology - the challenges of developing a collaborative research environment for heart and cancer modelling. Future Gener. Comput. Syst. 23(3): 457-465 (2007) - 2001
- [j2]Stephen Cameron, Joe Pitt-Francis:
Using OXSIM for path planning. J. Field Robotics 18(8): 421-431 (2001) - 2000
- [j1]Stephen Cameron, Joe Pitt-Francis:
Geometric Modelling and Robotics. Int. J. Shape Model. 6(2): 145-164 (2000)
Conference and Workshop Papers
- 2014
- [c5]James A. Grogan, Philip K. Maini, Joe Pitt-Francis, Helen M. Byrne:
Simulating tumour vasculature at multiple scales. IARWISOI 2014: 1-4 - 2010
- [c4]James Southern, Gerard J. Gorman, M. D. Piggott, Patrick E. Farrell, Miguel O. Bernabeu, Joe Pitt-Francis:
Anisotropic mesh adaptivity for cardiac electrophysiology. ICCS 2010: 935-944 - 2002
- [c3]Stephen Cameron, Tristam Fenton-May, Joe Pitt-Francis:
Directions in the Use and Computation of Proximity Queries. GMP 2002: 43-52 - 2000
- [c2]Stephen Cameron, Joe Pitt-Francis:
Proximity Queries for Modeling and Manufacturing. GMP 2000: 115-122 - 1998
- [c1]Joe Pitt-Francis, Roy Featherstone:
Automatic Generation of Sphere Hierachies from CAD Data. ICRA 1998: 324-329
Coauthor Index
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