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Journal Articles
- 2022
[j13]Irina Balaur
, Ludovic Roy, Vasundra Touré, Alexander Mazein, Charles Auffray:
GraphML-SBGN bidirectional converter for metabolic networks. J. Integr. Bioinform. 19(4) (2022)- 2021
- [j12]Hasan Balci, Metin Can Siper, Nasim Saleh, Ilkin Safarli, Ludovic Roy, Merve Kilicarslan, Rumeysa Ozaydin, Alexander Mazein, Charles Auffray, Özgün Babur, Emek Demir, Ugur Dogrusoz:
Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps. Bioinform. 37(10): 1475-1477 (2021) - 2020
- [j11]Martin Siebenhaller, Sune S. Nielsen, Fintan McGee, Irina Balaur, Charles Auffray, Alexander Mazein:
Human-like layout algorithms for signalling hypergraphs: outlining requirements. Briefings Bioinform. 21(1): 62-72 (2020) - 2019
- [j10]Mansoor A. S. Saqi, Artem Lysenko, Yike Guo, Tatsuhiko Tsunoda, Charles Auffray:
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures. Briefings Bioinform. 20(2): 609-623 (2019) - [j9]Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, Alexander Mazein, Andrei Yu. Zinovyev, Ugur Dogrusoz, Jan Hasenauer, Ronan M. T. Fleming, Nicolas Le Novère, Piotr Gawron, Thomas S. Ligon, Anna Niarakis, David P. Nickerson, Daniel Weindl, Rudi Balling, Emmanuel Barillot, Charles Auffray, Reinhard Schneider:
Community-driven roadmap for integrated disease maps. Briefings Bioinform. 20(2): 659-670 (2019) - 2018
- [j8]Bertrand De Meulder, Diane Lefaudeux, Aruna T. Bansal, Alexander Mazein, Amphun Chaiboonchoe, Hassan Ahmed, Irina Balaur, Mansoor A. S. Saqi, Johann Pellet, Stéphane Ballereau, Nathanaël Lemonnier, Kai Sun, Ioannis Pandis, Xian Yang, Manohara Batuwitage, Kosmas Kretsos, Jonathan van Eyll, Alun Bedding, Timothy Davison, Paul Dodson, Christopher Larminie, Anthony D. Postle, Julie Corfield, Ratko Djukanovic, Kian Fan Chung, Ian M. Adcock, Yike Guo, Peter J. Sterk, Alexander Manta, Anthony Rowe, Frédéric Baribaud, Charles Auffray:
A computational framework for complex disease stratification from multiple large-scale datasets. BMC Syst. Biol. 12(1): 60:1-60:23 (2018) - 2017
- [j7]Irina Balaur, Mansoor A. S. Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray:
EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer. J. Comput. Biol. 24(10): 969-980 (2017) - 2016
- [j6]Artem Lysenko, Irina A. Roznovat, Mansoor A. S. Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray:
Representing and querying disease networks using graph databases. BioData Min. 9: 23 (2016) - [j5]Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor A. S. Saqi, Ron Henkel, Johann Pellet, Charles Auffray:
STON: exploring biological pathways using the SBGN standard and graph databases. BMC Bioinform. 17: 494:1-494:9 (2016) - 2013
- [j4]Tommaso Mazza, Stefano Castellana, Angelo Andriulli, Charles Auffray, Manlio Vinciguerra, Valerio Pazienza:
Affinity analysis of differentially expressed genes in hepatocytes expressing HCV core genotype 1b or 3a. Biosyst. 114(1): 64-68 (2013) - 2009
- [j3]Jesper Tegnér, Albert Compte, Charles Auffray, Gary An, Gunnar Cedersund, Gilles Clermont, Boris S. Gutkin, Zoltán N. Oltvai, Klaas Enno Stephan, Randy Thomas, Pablo Villoslada:
Computational disease modeling - fact or fiction? BMC Syst. Biol. 3: 56 (2009) - 2005
- [j2]Motohiko Tanino, Marie-Anne Debily, Takuro Tamura, Teruyoshi Hishiki, Osamu Ogasawara, Katsuji Murakawa, Shoko Kawamoto, Kouichi Itoh, Shinya Watanabe, Sandro José de Souza, Sandrine Imbeaud, Esther Graudens, Eric Eveno, Phillip Hilton, Yukio Sudo, Janet Kelso, Kazuho Ikeo, Tadashi Imanishi, Takashi Gojobori, Charles Auffray, Winston Hide, Kousaku Okubo:
The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. Nucleic Acids Res. 33(Database-Issue): 567-572 (2005) - 1984
- [j1]Jiri Novotny, Charles Auffray:
A program for prediction of protein secondary structure from nucleotide sequence data: application to histocompatibility antigens. Nucleic Acids Res. 12(1): 243-255 (1984)
Conference and Workshop Papers
- 2003
- [c1]Magali Roux-Rouquié, Leroy E. Hood, Sandrine Imbeaud, Charles Auffray:
Issues in Computational Methods for Functional Genomics and Systems Biology. CMSB 2003: 182-186
Coauthor Index
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