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Jay D. Keasling
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2020 – today
- 2024
- [j8]Jacob B. Roberts, Alberto A Nava, Allison N. Pearson, Matthew R. Incha, Luis E. Valencia, Melody Ma, Abhay Rao, Jay D. Keasling:
Foldy: An open-source web application for interactive protein structure analysis. PLoS Comput. Biol. 20(2) (2024) - 2023
- [j7]Xavier B. Tao, Sarah Lafrance, Yifei Xing, Alberto A Nava, Héctor García Martín, Jay D. Keasling, Tyler W. H. Backman:
ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design. Nucleic Acids Res. 51(D1): 532-538 (2023) - [j6]Tyler W. H. Backman, Christina Schenk, Tijana Radivojevic, David Ando, Jahnavi Singh, Jeffrey J. Czajka, Zak Costello, Jay D. Keasling, Yinjie Tang, Elena V. Akhmatskaya, Héctor García Martín:
BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale. PLoS Comput. Biol. 19(11) (2023)
2010 – 2019
- 2018
- [j5]Clara H. Eng, Tyler W. H. Backman, Constance B. Bailey, Christophe N. Magnan, Héctor García Martín, Leonard Katz, Pierre Baldi, Jay D. Keasling:
ClusterCAD: a computational platform for type I modular polyketide synthase design. Nucleic Acids Res. 46(Database-Issue): D509-D515 (2018) - 2017
- [j4]Garrett W. Birkel, Amit Ghosh, Vinay Satish Kumar, Daniel Weaver, David Ando, Tyler W. H. Backman, Adam P. Arkin, Jay D. Keasling, Héctor García Martín:
The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. BMC Bioinform. 18(1): 205:1-205:11 (2017) - [j3]Garrett W. Birkel, Amit Ghosh, Vinay Satish Kumar, Daniel Weaver, David Ando, Tyler W. H. Backman, Adam P. Arkin, Jay D. Keasling, Héctor García Martín:
Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. BMC Bioinform. 18(1): 219:1-219:2 (2017) - 2015
- [j2]Héctor García Martín, Vinay Satish Kumar, Daniel Weaver, Amit Ghosh, Victor Chubukov, Aindrila Mukhopadhyay, Adam P. Arkin, Jay D. Keasling:
A Method to Constrain Genome-Scale Models with 13C Labeling Data. PLoS Comput. Biol. 11(9) (2015) - 2014
- [j1]Amit Ghosh, Jerome P. Nilmeier, Daniel Weaver, Paul D. Adams, Jay D. Keasling, Aindrila Mukhopadhyay, Christopher J. Petzold, Héctor García Martín:
A Peptide-Based Method for 13C Metabolic Flux Analysis in Microbial Communities. PLoS Comput. Biol. 10(9) (2014) - [c1]Meghdad Hajimorad, Jay D. Keasling:
Independence among synthetic genetic devices in the bacterium Escherichia coli extends to the time-domain. BioCAS 2014: 89-92
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