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2020 – today
- 2024
[j9]Jacob B. Roberts
, Alberto A Nava, Allison N. Pearson, Matthew R. Incha, Luis E. Valencia, Melody Ma, Abhay Rao, Jay D. Keasling:
Foldy: An open-source web application for interactive protein structure analysis. PLoS Comput. Biol. 20(2) (2024)- [j8]Søren D. Petersen, Lucas Levassor, Christine M. Pedersen, Jan Madsen, Lea G. Hansen, Jie Zhang, Ahmad K. Haidar, Rasmus J. N. Frandsen, Jay D. Keasling, Tilmann Weber, Nikolaus Sonnenschein, Michael K. Jensen:
teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering. PLoS Comput. Biol. 20(3): 1011929 (2024) - 2023
- [j7]Xavier B. Tao, Sarah Lafrance, Yifei Xing, Alberto A Nava, Héctor García Martín, Jay D. Keasling, Tyler W. H. Backman:
ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design. Nucleic Acids Res. 51(D1): 532-538 (2023) - [j6]Tyler W. H. Backman, Christina Schenk, Tijana Radivojevic, David Ando, Jahnavi Singh, Jeffrey J. Czajka, Zak Costello, Jay D. Keasling, Yinjie Tang, Elena V. Akhmatskaya, Héctor García Martín:
BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale. PLoS Comput. Biol. 19(11) (2023)
2010 – 2019
- 2018
- [j5]Clara H. Eng, Tyler W. H. Backman, Constance B. Bailey, Christophe N. Magnan, Héctor García Martín, Leonard Katz, Pierre Baldi, Jay D. Keasling:
ClusterCAD: a computational platform for type I modular polyketide synthase design. Nucleic Acids Res. 46(Database-Issue): D509-D515 (2018) - 2017
- [j4]Garrett W. Birkel, Amit Ghosh, Vinay Satish Kumar, Daniel Weaver, David Ando, Tyler W. H. Backman, Adam P. Arkin, Jay D. Keasling, Héctor García Martín:
The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. BMC Bioinform. 18(1): 205:1-205:11 (2017) - [j3]Garrett W. Birkel, Amit Ghosh, Vinay Satish Kumar, Daniel Weaver, David Ando, Tyler W. H. Backman, Adam P. Arkin, Jay D. Keasling, Héctor García Martín:
Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. BMC Bioinform. 18(1): 219:1-219:2 (2017) - 2015
- [j2]Héctor García Martín, Vinay Satish Kumar, Daniel Weaver, Amit Ghosh, Victor Chubukov, Aindrila Mukhopadhyay, Adam P. Arkin, Jay D. Keasling:
A Method to Constrain Genome-Scale Models with 13C Labeling Data. PLoS Comput. Biol. 11(9) (2015) - 2014
- [j1]Amit Ghosh, Jerome P. Nilmeier, Daniel Weaver, Paul D. Adams, Jay D. Keasling, Aindrila Mukhopadhyay, Christopher J. Petzold, Héctor García Martín:
A Peptide-Based Method for 13C Metabolic Flux Analysis in Microbial Communities. PLoS Comput. Biol. 10(9) (2014) - [c1]Meghdad Hajimorad, Jay D. Keasling:
Independence among synthetic genetic devices in the bacterium Escherichia coli extends to the time-domain. BioCAS 2014: 89-92
Coauthor Index
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