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2020 – today
- 2023
[j5]Ellis R. Crabtree
, Juan M. Bello-Rivas, Andrew L. Ferguson, Ioannis G. Kevrekidis:
GANs and Closures: Micro-Macro Consistency in Multiscale Modeling. Multiscale Model. Simul. 21(3): 1122-1146 (2023)- [i5]Michael S. Jones, Kirill Shmilovich, Andrew L. Ferguson:
DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces. CoRR abs/2307.12451 (2023) - 2022
- [i4]Ellis R. Crabtree, Juan M. Bello-Rivas, Andrew L. Ferguson, Ioannis G. Kevrekidis:
GANs and Closures: Micro-Macro Consistency in Multiscale Modeling. CoRR abs/2208.10715 (2022) - 2020
- [i3]Kirill Shmilovich, Rachael A. Mansbach, Hythem Sidky, Olivia E. Dunne, Sayak Subhra Panda, John D. Tovar, Andrew L. Ferguson:
Discovery of Self-Assembling π-Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation. CoRR abs/2002.01563 (2020)
2010 – 2019
- 2019
- [i2]Wei Chen, Hythem Sidky, Andrew L. Ferguson:
Nonlinear Discovery of Slow Molecular Modes using Hierarchical Dynamics Encoders. CoRR abs/1902.03336 (2019) - [i1]Wei Chen, Hythem Sidky, Andrew L. Ferguson:
Capabilities and Limitations of Time-lagged Autoencoders for Slow Mode Discovery in Dynamical Systems. CoRR abs/1906.00325 (2019) - 2018
- [j4]Wei Chen, Andrew L. Ferguson:
Molecular enhanced sampling with autoencoders: On-the-fly collective variable discovery and accelerated free energy landscape exploration. J. Comput. Chem. 39(25): 2079-2102 (2018) - 2017
- [j3]Andrew L. Ferguson:
BayesWHAM: A Bayesian approach for free energy estimation, reweighting, and uncertainty quantification in the weighted histogram analysis method. J. Comput. Chem. 38(18): 1583-1605 (2017) - 2016
- [j2]Jingtian Hu, Andrew L. Ferguson:
Global graph matching using diffusion maps. Intell. Data Anal. 20(3): 637-654 (2016) - 2014
- [j1]Jaclyn K. Mann, John P. Barton, Andrew L. Ferguson, Saleha Omarjee, Bruce D. Walker, Arup Chakraborty, Thumbi Ndung'u:
The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by In Vitro Testing. PLoS Comput. Biol. 10(8) (2014)
Coauthor Index
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