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2020 – today
- 2024
[c5]Enakshi Saha, Viola Fanfani, Panagiotis Mandros, Marouen Ben Guebila, Jonas Fischer, Katherine H. Shutta, Kimberly Glass, Dawn L. DeMeo, Camila Miranda Lopes-Ramos, John Quackenbush:
BONOBO: Bayesian Optimized Sample-Specific Networks Obtained by Omics Data. RECOMB 2024: 328-331- 2023
- [j10]Ping-Han Hsieh, Camila Miranda Lopes-Ramos, Manuela Zucknick
, Geir Kjetil Sandve, Kimberly Glass, Marieke L. Kuijjer:
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. Bioinform. 39(10) (2023) - 2022
- [j9]Marouen Ben Guebila, Camila Miranda Lopes-Ramos, Deborah A. Weighill, Abhijeet Rajendra Sonawane, Rebekka Burkholz, Behrouz Shamsaei, John Platig, Kimberly Glass, Marieke L. Kuijjer, John Quackenbush:
GRAND: a database of gene regulatory network models across human conditions. Nucleic Acids Res. 50(D1): 610-621 (2022) - 2021
- [c4]Deborah A. Weighill, Marouen Ben Guebila, Camila Miranda Lopes-Ramos, Kimberly Glass, John Quackenbush, John Platig, Rebekka Burkholz:
Gene Regulatory Network Inference as Relaxed Graph Matching. AAAI 2021: 10263-10272 - 2020
- [j8]Marieke L. Kuijjer, Maud Fagny, Alessandro Marin, John Quackenbush, Kimberly Glass:
PUMA: PANDA Using MicroRNA Associations. Bioinform. 36(18): 4765-4773 (2020)
2010 – 2019
- 2019
- [c3]Arlene E. Chung, Kimberly Glass, Jacob Leisey-Bartsch, Lucas Mentch, Nils Gehlenborg, David Gotz:
Precision VISSTA: Bring-Your-Own-Device (BYOD) mHealth Data for Precision Health. AMIA 2019 - [c2]Tim Coleman, Lucas Mentch, Kimberly Glass, David Gotz, Nils Gehlenborg, Arlene E. Chung:
Precision VISSTA: Machine Learning Prediction and Inference for Bring-Your-Own-Device (BYOD) mHealth Data. AMIA 2019 - 2017
- [j7]Daniel Schlauch, Joseph N. Paulson, Albert Young, Kimberly Glass, John Quackenbush:
Estimating gene regulatory networks with pandaR. Bioinform. 33(14): 2232-2234 (2017) - [j6]Reiko Nishihara, Kimberly Glass, Kosuke Mima, Tsuyoshi Hamada, Jonathan A. Nowak, Zhi Rong Qian, Peter Kraft, Edward L. Giovannucci, Charles S. Fuchs, Andrew T. Chan, John Quackenbush, Shuji Ogino, Jukka-Pekka Onnela:
Biomarker correlation network in colorectal carcinoma by tumor anatomic location. BMC Bioinform. 18(1): 304 (2017) - [j5]Joseph N. Paulson, Cho-Yi Chen, Camila Miranda Lopes-Ramos, Marieke L. Kuijjer, John Platig, Abhijeet R. Sonawane, Maud Fagny, Kimberly Glass, John Quackenbush:
Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. BMC Bioinform. 18(1): 437:1-437:10 (2017) - 2016
- [j4]David G. P. van IJzendoorn, Kimberly Glass, John Quackenbush, Marieke L. Kuijjer:
PyPanda: a Python package for gene regulatory network reconstruction. Bioinform. 32(21): 3363-3365 (2016) - 2015
- [j3]Kimberly Glass, John Quackenbush, Dimitrios Spentzos, Benjamin Haibe-Kains, Guo-Cheng Yuan:
A network model for angiogenesis in ovarian cancer. BMC Bioinform. 16: 115:1-115:17 (2015) - [j2]Kimberly Glass, Michelle Girvan:
Finding New Order in Biological Functions from the Network Structure of Gene Annotations. PLoS Comput. Biol. 11(11) (2015) - [c1]Kimberly Glass, John Quackenbush, Jeremy Kepner:
High performance computing of gene regulatory networks using a message-passing model. HPEC 2015: 1-6 - 2014
- [j1]Kimberly Glass, John Quackenbush, Edwin K. Silverman, Bartolome Celli, Stephen I. Rennard, Guo-Cheng Yuan, Dawn L. DeMeo:
Sexually-dimorphic targeting of functionally-related genes in COPD. BMC Syst. Biol. 8: 118 (2014)
Coauthor Index
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