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Journal Articles
- 2023
[j5]Frank J. Bruggeman
, Maaike Remeijer, Maarten Droste, Luis Salinas, Meike T. Wortel, Robert Planqué, Herbert M. Sauro, Bas Teusink, Hans V. Westerhoff:
Whole-cell metabolic control analysis. Biosyst. 234: 105067 (2023)- 2021
- [j4]Tom J. Clement, Erik B. Baalhuis, Bas Teusink, Frank J. Bruggeman, Robert Planqué, Daan H. de Groot:
Unlocking Elementary Conversion Modes: ecmtool Unveils All Capabilities of Metabolic Networks. Patterns 2(1): 100177 (2021) - 2020
- [j3]Daan H. de Groot, Josephus Hulshof, Bas Teusink, Frank J. Bruggeman, Robert Planqué:
Elementary Growth Modes provide a molecular description of cellular self-fabrication. PLoS Comput. Biol. 16(1) (2020) - 2019
- [j2]Daan H. de Groot, Coco van Boxtel, Robert Planqué, Frank J. Bruggeman, Bas Teusink:
The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates. PLoS Comput. Biol. 15(3) (2019) - 2018
- [j1]Robert Planqué, Josephus Hulshof, Bas Teusink, Johannes C. Hendriks, Frank J. Bruggeman:
Maintaining maximal metabolic flux by gene expression control. PLoS Comput. Biol. 14(9) (2018)
Conference and Workshop Papers
- 2024
- [c27]Alexis Joly, Lukás Picek, Stefan Kahl, Hervé Goëau, Vincent Espitalier, Christophe Botella, Diego Marcos, Joaquim Estopinan, César Leblanc, Théo Larcher, Milan Sulc, Marek Hrúz, Maximilien Servajean, Hervé Glotin, Robert Planqué, Willem-Pier Vellinga, Holger Klinck, Tom Denton, Ivan Eggel, Pierre Bonnet, Henning Müller:
Overview of LifeCLEF 2024: Challenges on Species Distribution Prediction and Identification. CLEF (2) 2024: 183-207 - [c26]Stefan Kahl, Tom Denton, Holger Klinck, Vijay Ramesh, Viral Joshi, Meghana Srivathsa, Akshay Anand, Chiti Arvind, Harikrishnan Cp, Suyash Sawant, Robin Vv, Hervé Glotin, Hervé Goëau, Willem-Pier Vellinga, Robert Planqué, Alexis Joly:
Overview of BirdCLEF 2024: Acoustic identification of under-studied bird species in the Western Ghats. CLEF (Working Notes) 2024: 1948-1957 - [c25]Alexis Joly, Lukás Picek, Stefan Kahl, Hervé Goëau, Vincent Espitalier, Christophe Botella, Benjamin Deneu, Diego Marcos, Joaquim Estopinan, César Leblanc, Théo Larcher, Milan Sulc, Marek Hrúz, Maximilien Servajean, Jirí Matas, Hervé Glotin, Robert Planqué, Willem-Pier Vellinga, Holger Klinck, Tom Denton, Andrew M. Durso, Ivan Eggel, Pierre Bonnet, Henning Müller:
LifeCLEF 2024 Teaser: Challenges on Species Distribution Prediction and Identification. ECIR (6) 2024: 19-27 - 2023
- [c24]Alexis Joly, Christophe Botella, Lukás Picek, Stefan Kahl, Hervé Goëau, Benjamin Deneu, Diego Marcos, Joaquim Estopinan, César Leblanc, Théo Larcher, Rail Chamidullin, Milan Sulc, Marek Hrúz, Maximilien Servajean, Hervé Glotin, Robert Planqué, Willem-Pier Vellinga, Holger Klinck, Tom Denton, Ivan Eggel, Pierre Bonnet, Henning Müller:
Overview of LifeCLEF 2023: Evaluation of AI Models for the Identification and Prediction of Birds, Plants, Snakes and Fungi. CLEF 2023: 416-439 - [c23]Stefan Kahl, Tom Denton, Holger Klinck, Hendrik Reers, Francis Cherutich, Hervé Glotin, Hervé Goëau, Willem-Pier Vellinga, Robert Planqué, Alexis Joly:
Overview of BirdCLEF 2023: Automated Bird Species Identification in Eastern Africa. CLEF (Working Notes) 2023: 1934-1942 - [c22]Alexis Joly, Hervé Goëau, Stefan Kahl, Lukás Picek, Christophe Botella, Diego Marcos, Milan Sulc, Marek Hrúz, Titouan Lorieul, Sara Si-Moussi, Maximilien Servajean, Benjamin Kellenberger, Elijah Cole, Andrew Durso, Hervé Glotin, Robert Planqué, Willem-Pier Vellinga, Holger Klinck, Tom Denton, Ivan Eggel, Pierre Bonnet, Henning Müller:
LifeCLEF 2023 Teaser: Species Identification and Prediction Challenges. ECIR (3) 2023: 568-576 - 2022
- [c21]Alexis Joly, Hervé Goëau, Stefan Kahl, Lukás Picek, Titouan Lorieul, Elijah Cole, Benjamin Deneu, Maximilien Servajean, Andrew Durso, Hervé Glotin, Robert Planqué, Willem-Pier Vellinga, Amanda Navine, Holger Klinck, Tom Denton, Ivan Eggel, Pierre Bonnet, Milan Sulc, Marek Hrúz:
Overview of LifeCLEF 2022: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction. CLEF 2022: 257-285 - [c20]Stefan Kahl, Amanda Navine, Tom Denton, Holger Klinck, Patrick Hart, Hervé Glotin, Hervé Goëau, Willem-Pier Vellinga, Robert Planqué, Alexis Joly:
Overview of BirdCLEF 2022: Endangered bird species recognition in soundscape recordings. CLEF (Working Notes) 2022: 1929-1939 - [c19]Alexis Joly, Hervé Goëau, Stefan Kahl, Lukás Picek, Titouan Lorieul, Elijah Cole, Benjamin Deneu, Maximilien Servajean, Andrew Durso, Isabelle Bolon, Hervé Glotin, Robert Planqué, Willem-Pier Vellinga, Holger Klinck, Tom Denton, Ivan Eggel, Pierre Bonnet, Henning Müller, Milan Sulc:
LifeCLEF 2022 Teaser: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction. ECIR (2) 2022: 390-399 - 2021
- [c18]Alexis Joly, Hervé Goëau, Stefan Kahl, Lukás Picek, Titouan Lorieul, Elijah Cole, Benjamin Deneu, Maximilien Servajean, Andrew Durso, Isabelle Bolon, Hervé Glotin, Robert Planqué, Rafael Luis Ruiz De Castaneda, Willem-Pier Vellinga, Holger Klinck, Tom Denton, Ivan Eggel, Pierre Bonnet, Henning Müller:
Overview of LifeCLEF 2021: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction. CLEF 2021: 371-393 - [c17]Stefan Kahl, Tom Denton, Holger Klinck, Hervé Glotin, Hervé Goëau, Willem-Pier Vellinga, Robert Planqué, Alexis Joly:
Overview of BirdCLEF 2021: Bird call identification in soundscape recordings. CLEF (Working Notes) 2021: 1437-1450 - 2020
- [c16]Stefan Kahl, Mary Clapp, W. Alexander Hopping, Hervé Goëau, Hervé Glotin, Robert Planqué, Willem-Pier Vellinga, Alexis Joly:
Overview of BirdCLEF 2020: Bird Sound Recognition in Complex Acoustic Environments. CLEF (Working Notes) 2020 - 2019
- [c15]Alexis Joly, Hervé Goëau, Christophe Botella, Stefan Kahl, Maximilien Servajean, Hervé Glotin, Pierre Bonnet, Robert Planqué, Fabian-Robert Stöter, Willem-Pier Vellinga, Henning Müller:
Overview of LifeCLEF 2019: Identification of Amazonian Plants, South & North American Birds, and Niche Prediction. CLEF 2019: 387-401 - [c14]Stefan Kahl, Fabian-Robert Stöter, Hervé Goëau, Hervé Glotin, Bob Planqué, Willem-Pier Vellinga, Alexis Joly:
Overview of BirdCLEF 2019: Large-Scale Bird Recognition in Soundscapes. CLEF (Working Notes) 2019 - [c13]Alexis Joly, Hervé Goëau, Christophe Botella, Stefan Kahl, Marion Poupard, Maximilien Servajean, Hervé Glotin, Pierre Bonnet, Willem-Pier Vellinga, Robert Planqué, Jan Schlüter, Fabian-Robert Stöter, Henning Müller:
LifeCLEF 2019: Biodiversity Identification and Prediction Challenges. ECIR (2) 2019: 275-282 - 2018
- [c12]Hervé Goëau, Stefan Kahl, Hervé Glotin, Bob Planqué, Willem-Pier Vellinga, Alexis Joly:
Overview of BirdCLEF 2018: Monospecies vs. Sundscape Bird Identification. CLEF (Working Notes) 2018 - [c11]Alexis Joly, Hervé Goëau, Christophe Botella, Hervé Glotin, Pierre Bonnet, Willem-Pier Vellinga, Robert Planqué, Henning Müller:
Overview of LifeCLEF 2018: A Large-Scale Evaluation of Species Identification and Recommendation Algorithms in the Era of AI. CLEF 2018: 247-266 - 2017
- [c10]Hervé Goëau, Hervé Glotin, Willem-Pier Vellinga, Bob Planqué, Alexis Joly:
LifeCLEF Bird Identification Task 2017. CLEF (Working Notes) 2017 - [c9]Alexis Joly, Hervé Goëau, Hervé Glotin, Concetto Spampinato, Pierre Bonnet, Willem-Pier Vellinga, Jean-Christophe Lombardo, Robert Planqué, Simone Palazzo, Henning Müller:
LifeCLEF 2017 Lab Overview: Multimedia Species Identification Challenges. CLEF 2017: 255-274 - 2016
- [c8]Alexis Joly, Hervé Goëau, Hervé Glotin, Concetto Spampinato, Pierre Bonnet, Willem-Pier Vellinga, Julien Champ, Robert Planqué, Simone Palazzo, Henning Müller:
LifeCLEF 2016: Multimedia Life Species Identification Challenges. CLEF 2016: 286-310 - [c7]Hervé Goëau, Hervé Glotin, Willem-Pier Vellinga, Robert Planqué, Alexis Joly:
LifeCLEF Bird Identification Task 2016: The arrival of Deep learning. CLEF (Working Notes) 2016: 440-449 - 2015
- [c6]Hervé Goëau, Hervé Glotin, Willem-Pier Vellinga, Robert Planqué, Andreas Rauber, Alexis Joly:
LifeCLEF Bird Identification Task 2015. CLEF (Working Notes) 2015 - [c5]Alexis Joly, Hervé Goëau, Hervé Glotin, Concetto Spampinato, Pierre Bonnet, Willem-Pier Vellinga, Robert Planqué, Andreas Rauber, Simone Palazzo, Bob Fisher, Henning Müller:
LifeCLEF 2015: Multimedia Life Species Identification Challenges. CLEF 2015: 462-483 - [c4]Willem-Pier Vellinga, Robert Planqué:
The Xeno-canto Collection and its Relation to Sound Recognition and Classification. CLEF (Working Notes) 2015 - 2014
- [c3]Alexis Joly, Hervé Goëau, Hervé Glotin, Concetto Spampinato, Pierre Bonnet, Willem-Pier Vellinga, Robert Planqué, Andreas Rauber, Robert B. Fisher, Henning Müller:
LifeCLEF 2014: Multimedia Life Species Identification Challenges. CLEF 2014: 229-249 - [c2]Hervé Goëau, Hervé Glotin, Willem-Pier Vellinga, Robert Planqué, Andreas Rauber, Alexis Joly:
LifeCLEF Bird Identication Task 2014. CLEF (Working Notes) 2014: 585-597 - [c1]Alexis Joly, Henning Müller, Hervé Goëau, Hervé Glotin, Concetto Spampinato, Andreas Rauber, Pierre Bonnet, Willem-Pier Vellinga, Robert B. Fisher, Robert Planqué:
LifeCLEF: Multimedia life species identification. EMR@ICMR 2014: 7-13
Parts in Books or Collections
- 2019
- [p1]Alexis Joly, Hervé Goëau, Hervé Glotin, Concetto Spampinato, Pierre Bonnet, Willem-Pier Vellinga, Jean-Christophe Lombardo, Robert Planqué, Simone Palazzo, Henning Müller:
Biodiversity Information Retrieval Through Large Scale Content-Based Identification: A Long-Term Evaluation. Information Retrieval Evaluation in a Changing World 2019: 389-413
Informal and Other Publications
- 2024
- [i1]Burooj Ghani, Vincent J. Kalkman, Bob Planqué, Willem-Pier Vellinga, Lisa F. Gill, Dan Stowell:
Generalization in birdsong classification: impact of transfer learning methods and dataset characteristics. CoRR abs/2409.15383 (2024)
Coauthor Index
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