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Journal Articles
- 2023
[j10]Albert Burger
, Richard A. Baldock, David J. Adams, Shahida Din, Irene Papatheodorou, Michael Glinka, Bill Hill, Derek Houghton, Mehran Sharghi, Michael N. Wicks, Mark J. Arends:
Towards a clinically-based common coordinate framework for the human gut cell atlas: the gut models. BMC Medical Informatics Decis. Mak. 23(1): 36 (2023)- 2022
- [j9]Luca Barbon, Victoria Offord, Elizabeth J. Radford, Adam P. Butler, Sebastian S. Gerety, David J. Adams, Hong Kee Tan, Andrew J. Waters:
Variant Library Annotation Tool (VaLiAnT): an oligonucleotide library design and annotation tool for saturation genome editing and other deep mutational scanning experiments. Bioinform. 38(4): 892-899 (2022) - 2020
- [j8]Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo:
The evolutionary history of 2,658 cancers. Nat. 578(7793): 122-128 (2020) - 2019
- [j7]Raul Ossio, O. Isaac Garcia-Salinas, Diego Said Anaya-Mancilla, Jair S. García-Sotelo, Luis A. Aguilar, David J. Adams, Carla Daniela Robles-Espinoza:
VCF/Plotein: visualization and prioritization of genomic variants from human exome sequencing projects. Bioinform. 35(22): 4803-4805 (2019) - 2017
- [j6]Louise van der Weyden, Mark J. Arends, Andrew D. Campbell, Tobias Bald, Hannah Wardle-Jones, Nicola Griggs, Martin Del Castillo Velasco-Herrera, Thomas Tüting, Owen J. Sansom, Natasha A. Karp, Simon Clare, Diane Gleeson, Edward Ryder, Antonella Galli, Elizabeth Tuck, Emma L. Cambridge, Thierry Voet, Iain C. Macaulay, Kim Wong, Sarah Spiegel, Anneliese O. Speak, David J. Adams:
Genome-wide in vivo screen identifies novel host regulators of metastatic colonization. Nat. 541(7636): 233-236 (2017) - 2013
- [j5]Thomas M. Keane, Kim Wong, David J. Adams:
RetroSeq: transposable element discovery from next-generation sequencing data. Bioinform. 29(3): 389-390 (2013) - [j4]Mamunur Rashid, Carla Daniela Robles-Espinoza, Alistair G. Rust, David J. Adams:
Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes. Bioinform. 29(17): 2208-2210 (2013) - 2010
- [j3]Jared T. Simpson, Rebecca E. McIntyre, David J. Adams, Richard Durbin:
Copy number variant detection in inbred strains from short read sequence data. Bioinform. 26(4): 565-567 (2010) - [j2]Christiaan Klijn, Jan Bot, David J. Adams, Marcel J. T. Reinders, Lodewyk F. A. Wessels, Jos Jonkers:
Identification of Networks of Co-Occurring, Tumor-Related DNA Copy Number Changes Using a Genome-Wide Scoring Approach. PLoS Comput. Biol. 6(1) (2010) - 2008
- [j1]Jun Kong, Fei Zhu, Jim Stalker, David J. Adams:
iMapper: a web application for the automated analysis and mapping of insertional mutagenesis sequence data against Ensembl genomes. Bioinform. 24(24): 2923-2925 (2008)
Conference and Workshop Papers
- 2014
- [c2]Ronald S. Harichandran, Jean Nocito-Gobel, Eric Brisart, Nadiye O. Erdil, Michael A. Collura, Samuel B. Daniels, W. David Harding, David J. Adams:
A comprehensive engineering college-wide program for developing technical communication skills in students. FIE 2014: 1-8 - 2013
- [c1]Jeroen de Ridder, Jaap Kool, Anthony Uren, Jan Bot, Johann de Jong, Alistair G. Rust, Anton Berns, Maarten van Lohuizen, David J. Adams, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Mutational Genomics for Cancer Pathway Discovery. PRIB 2013: 35-46
Coauthor Index
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