default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDRuedi Aebersold
Person information
- affiliation: ETH Zurich, Institute for Systems Biology, Switzerland
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
Journal Articles
- 2023
[j22]Fang Wang
, Fan Yang, Longkai Huang, Wei Li, Jiangning Song, Robin B. Gasser, Ruedi Aebersold, Guohua Wang, Jianhua Yao:
Deep domain adversarial neural network for the deconvolution of cell type mixtures in tissue proteome profiling. Nat. Mac. Intell. 5(11): 1236-1249 (2023)- 2022
- [j21]Varun S. Sharma, Andrea Fossati, Rodolfo Ciuffa, Marija Buljan, Evan G. Williams, Zhen Chen, Wenguang Shao, Patrick G. A. Pedrioli, Anthony W. Purcell, María Rodríguez Martínez, Jiangning Song, Matteo Manica, Ruedi Aebersold, Chen Li:
PCfun: a hybrid computational framework for systematic characterization of protein complex function. Briefings Bioinform. 23(4) (2022) - 2021
- [j20]Joris Cadow, Matteo Manica, Roland Mathis, Tiannan Guo, Ruedi Aebersold, María Rodríguez Martínez:
On the feasibility of deep learning applications using raw mass spectrometry data. Bioinform. 37(Supplement): 245-253 (2021) - 2018
- [j19]Wenguang Shao, Patrick G. A. Pedrioli, Witold Wolski, Christian Scurtescu, Emanuel Schmid, Juan Antonio Vizcaíno, Mathieu Courcelles, Heiko Schuster, Daniel Kowalewski, Fabio Marino, Cecilia S. Lindestam Arlehamn, Kerrie Vaughan, Bjoern Peters, Alessandro Sette, Tom H. M. Ottenhoff, Krista E. Meijgaarden, Natalie Nieuwenhuizen, Stefan H. E. Kaufmann, Ralph Schlapbach, John C. Castle, Alexey I. Nesvizhskii, Morten Nielsen, Eric W. Deutsch, David S. Campbell, Robert L. Moritz, Roman A. Zubarev, Anders Jimmy Ytterberg, Anthony W. Purcell, Miguel Marcilla, Alberto Paradela, Qi Wang, Catherine E. Costello, Nicola Ternette, Peter A. van Veelen, Cécile A. C. M. van Els, Albert J. R. Heck, Gustavo A. de Souza, Ludvig Magne Sollid, Arie Admon, Stefan Stevanovic, Hans-Georg Rammensee, Pierre Thibault, Claude Perreault, Michal Bassani-Sternberg, Ruedi Aebersold, Etienne Caron:
The SysteMHC Atlas project. Nucleic Acids Res. 46(Database-Issue): D1237-D1247 (2018) - [j18]Nicolas Henry, Eva-Maria Krammer, Florian Stengel, Quentin Adams, François Van Liefferinge, Ellen Hubin, Rui Chaves, Rouslan Efremov, Ruedi Aebersold, Guy Vandenbussche, Martine Prévost, Vincent Raussens, Stéphanie Deroo:
Lipidated apolipoprotein E4 structure and its receptor binding mechanism determined by a combined cross-linking coupled to mass spectrometry and molecular dynamics approach. PLoS Comput. Biol. 14(6) (2018) - 2016
- [j17]Ruedi Aebersold, Matthias Mann:
Mass-spectrometric exploration of proteome structure and function. Nat. 537(7620): 347-355 (2016) - 2015
- [j16]Hannes L. Röst, George Rosenberger, Ruedi Aebersold, Lars Malmström:
Efficient visualization of high-throughput targeted proteomics experiments: TAPIR. Bioinform. 31(14): 2415-2417 (2015) - [j15]Lin-Yang Cheng, Yansheng Liu, Ching-Yun Chang, Hannes L. Röst, Ruedi Aebersold, Olga Vitek:
Statistical elimination of spectral features with large between-run variation enhances quantitative protein-level conclusions in experiments with data-independent spectral acquisition. BMC Bioinform. 16(S-2): A4 (2015) - [j14]Nadinath B. Nillegoda, Janine Kirstein, Anna Szlachcic, Mykhaylo Berynskyy, Antonia Stank, Florian Stengel, Kristin Arnsburg, Xuechao Gao, Annika Scior, Ruedi Aebersold, D. Lys Guilbride, Rebecca C. Wade, Richard I. Morimoto, Matthias P. Mayer, Bernd Bukau:
Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation. Nat. 524(7564): 247-251 (2015) - 2014
- [j13]George Rosenberger, Christina Ludwig, Hannes L. Röst, Ruedi Aebersold, Lars Malmström:
aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data. Bioinform. 30(17): 2511-2513 (2014) - 2012
- [j12]Timothy Clough, Safia Thaminy, Susanne Ragg, Ruedi Aebersold, Olga Vitek:
Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs. BMC Bioinform. 13(S-16): S6 (2012) - 2011
- [j11]Abdullah Kahraman, Lars Malmström, Ruedi Aebersold:
Xwalk: computing and visualizing distances in cross-linking experiments. Bioinform. 27(15): 2163-2164 (2011) - [j10]Mi-Youn K. Brusniak, Sung-Tat Kwok, Mark Christiansen, David S. Campbell, Lukas Reiter, Paola Picotti, Ulrike Kusebauch, Hector Ramos, Eric W. Deutsch, Jingchun Chen, Robert L. Moritz, Ruedi Aebersold:
ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry. BMC Bioinform. 12: 78 (2011) - [j9]Angela Bauch, Izabela Adamczyk, Piotr Buczek, Franz-Josef Elmer, Kaloyan Enimanev, Pawel Glyzewski, Manuel Kohler, Tomasz Pylak, Andreas Quandt, Chandrasekhar Ramakrishnan, Christian Beisel, Lars Malmström, Ruedi Aebersold, Bernd Rinn:
openBIS: a flexible framework for managing and analyzing complex data in biology research. BMC Bioinform. 12: 468 (2011) - [j8]Manfred Claassen, Ruedi Aebersold, Joachim M. Buhmann:
Proteome Coverage Prediction for Integrated Proteomics Datasets. J. Comput. Biol. 18(3): 283-293 (2011) - 2009
- [j7]Nils Gehlenborg, Wei Yan, Inyoul Y. Lee, Hyuntae Yoo, Kay Nieselt, Daehee Hwang, Ruedi Aebersold, Leroy Hood:
Prequips - an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data. Bioinform. 25(5): 682-683 (2009) - [j6]Manfred Claassen, Ruedi Aebersold, Joachim M. Buhmann:
Proteome coverage prediction with infinite Markov models. Bioinform. 25(12) (2009) - [j5]Sandra N. Loevenich, Erich Brunner, Nichole L. King, Eric W. Deutsch, Stephen E. Stein, Ruedi Aebersold, Ernst Hafen:
The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation. BMC Bioinform. 10 (2009) - 2008
- [j4]Hector Ramos, P. Shannon, Ruedi Aebersold:
The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data. Bioinform. 24(18): 2110-2111 (2008) - [j3]Daehee Hwang, Ning Zhang, Hookeun Lee, Eugene Yi, Hui Zhang, Inyoul Y. Lee, Leroy Hood, Ruedi Aebersold:
MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis. Bioinform. 24(22): 2641-2642 (2008) - [j2]Mi-Youn K. Brusniak, Bernd Bodenmiller, David S. Campbell, Kelly Cooke, James Eddes, Andrew Garbutt, Hollis Lau, Simon Letarte, Lukas N. Mueller, Vagisha Sharma, Olga Vitek, Ning Zhang, Ruedi Aebersold, Julian D. Watts:
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics. BMC Bioinform. 9 (2008) - 2006
- [j1]Frank Desiere, Eric W. Deutsch, Nichole L. King, Alexey I. Nesvizhskii, Parag Mallick, Jimmy K. Eng, Sharon Chen, James Eddes, Sandra N. Loevenich, Ruedi Aebersold:
The PeptideAtlas project. Nucleic Acids Res. 34(Database-Issue): 655-658 (2006)
Conference and Workshop Papers
- 2010
- [c2]Manfred Claassen, Ruedi Aebersold, Joachim M. Buhmann:
Proteome Coverage Prediction for Integrated Proteomics Datasets. RECOMB 2010: 96-109 - 2007
- [c1]Dominique Zosso, Michael Podvinec, Markus Müller, Ruedi Aebersold, Manuel C. Peitsch, Torsten Schwede:
Tandem Mass Spectrometry Protein Identification on a PC Grid. HealthGrid 2007: 3-12
Parts in Books or Collections
- 2010
- [p1]Henry Lam, Ruedi Aebersold:
Spectral Library Searching for Peptide Identification via Tandem MS. Proteome Bioinformatics 2010: 95-103
Informal and Other Publications
- 2015
- [i2]Rudolf Aebersold, Oliver Kohlbacher, Olga Vitek:
Computational Mass Spectrometry (Dagstuhl Seminar 15351). Dagstuhl Reports 5(8): 9-33 (2015) - 2013
- [i1]Ruedi Aebersold, Oliver Kohlbacher, Olga Vitek:
Computational Mass Spectrometry (Dagstuhl Seminar 13491). Dagstuhl Reports 3(12): 1-16 (2013)
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 22:20 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
