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Jean Peccoud
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2020 – today
- 2024
- [j14]Connor R. King, Casey-Tyler Berezin, Jean Peccoud:
Stochastic model of vesicular stomatitis virus replication reveals mutational effects on virion production. PLoS Comput. Biol. 20(2) (2024) - 2023
- [j13]Douglas Densmore, Nathan J. Hillson, Eric Klavins, Chris J. Myers, Jean Peccoud, Giovanni Stracquadanio:
Introduction to the Special Issue on BioFoundries and Cloud Laboratories. ACM J. Emerg. Technol. Comput. Syst. 19(3): 26:1-26:2 (2023) - [j12]Casey-Tyler Berezin, Luis U. Aguilera, Sonja Billerbeck, Philip E. Bourne, Douglas Densmore, Paul S. Freemont, Thomas E. Gorochowski, Sarah I. Hernandez, Nathan J. Hillson, Connor R. King, Michael Köpke, Shuyi Ma, Katie M. Miller, Tae Seok Moon, Jason H. Moore, Brian Munsky, Chris J. Myers, Dequina A. Nicholas, Samuel J. Peccoud, Wen Zhou, Jean Peccoud:
Ten simple rules for managing laboratory information. PLoS Comput. Biol. 19(12) (2023) - 2020
- [j11]Diptendu Mohan Kar, Indrajit Ray, Jenna Gallegos, Jean Peccoud, Indrakshi Ray:
Synthesizing DNA molecules with identity-based digital signatures to prevent malicious tampering and enabling source attribution. J. Comput. Secur. 28(4): 437-467 (2020)
2010 – 2019
- 2018
- [j10]Aditya Pratapa, Neil Adames, Pavel K. Brazhnik, Nicholas Franzese, John J. Tyson, Jean Peccoud, T. M. Murali:
CrossPlan: systematic planning of genetic crosses to validate mathematical models. Bioinform. 34(13): 2237-2244 (2018) - [c6]Aditya Pratapa, Neil Adames, Pavel K. Kraikivski, Nicholas Franzese, John J. Tyson, Jean Peccoud, T. M. Murali:
CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models. BCB 2018: 567 - [c5]Diptendu Mohan Kar, Indrajit Ray, Jenna Gallegos, Jean Peccoud:
Digital Signatures to Ensure the Authenticity and Integrity of Synthetic DNA Molecules. NSPW 2018: 110-122 - 2017
- [j9]Aditya Bharadwaj, Divit P. Singh, Anna M. Ritz, Allison N. Tegge, Christopher L. Poirel, Pavel K. Brazhnik, Neil Adames, Kurt Luther, Shiv D. Kale, Jean Peccoud, John J. Tyson, T. M. Murali:
GraphSpace: stimulating interdisciplinary collaborations in network biology. Bioinform. 33(19): 3134-3136 (2017) - 2016
- [j8]Debashis Barik, David A. Ball, Jean Peccoud, John J. Tyson:
A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability. PLoS Comput. Biol. 12(12) (2016) - 2014
- [j7]Mandy L. Wilson, Sakiko Okumoto, Laura Adam, Jean Peccoud:
Development of a domain-specific genetic language to design Chlamydomonas reinhardtii expression vectors. Bioinform. 30(2): 251-257 (2014) - [j6]Jean Peccoud:
If You Can't Measure It, You Can't Manage It. PLoS Comput. Biol. 10(3) (2014) - 2010
- [c4]David A. Ball, Matthew W. Lux, Russell R. Graef, Matthew W. Peterson, Jane D. Valenti, John Dileo, Jean Peccoud:
Co-Design in Synthetic Biology: A System-Level Analysis of the Development of an Environmental Sensing Device. Pacific Symposium on Biocomputing 2010: 385-396
2000 – 2009
- 2009
- [j5]Michael J. Czar, Yizhi Cai, Jean Peccoud:
Writing DNA with GenoCADTM. Nucleic Acids Res. 37(Web-Server-Issue): 40-47 (2009) - [j4]Yizhi Cai, Matthew W. Lux, Laura Adam, Jean Peccoud:
Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars. PLoS Comput. Biol. 5(10) (2009) - 2007
- [j3]Yizhi Cai, Brian Hartnett, Claes Gustafsson, Jean Peccoud:
A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts. Bioinform. 23(20): 2760-2767 (2007) - [j2]Jean Peccoud, Tod Courtney, William H. Sanders:
Möbius: an integrated discrete-event modeling environment. Bioinform. 23(24): 3412-3414 (2007) - 2006
- [j1]Mark Griffith, Tod Courtney, Jean Peccoud, William H. Sanders:
Dynamic partitioning for hybrid simulation of the bistable HIV-1 transactivation network. Bioinform. 22(22): 2782-2789 (2006) - 2005
- [c3]Jean Peccoud, Kent Vander Velden:
Parameterization of a Nonlinear Genotype to Phenotype Map Using Molecular Networks. Pacific Symposium on Biocomputing 2005 - 2003
- [c2]Kent Vander Velden, Jean Peccoud:
Modeling networks of molecular interactions in the living cell: structure, dynamics, and applications. PNPM 2003: 2-8
1990 – 1999
- 1999
- [c1]P. J. E. Goss, Jean Peccoud:
Analysis of the Stabilizing Effect of ROM on the Genetic Network Controlling ColE1 Plasmid Replication. Pacific Symposium on Biocomputing 1999: 65-76 - 1991
- [b1]Jean Peccoud:
Dissection moléculaire du site de fixation de l'antigène d'une molécule d'histocompatibilité de classe II et modélisation stochastique des interactions macromoléculaires au sein de la cellule vivante. (Molecular dissection of the antigen binding site of a major histocompatibility complex class II molecule and stochastic modelling of macromolecular interactions in the living cell). Joseph Fourier University, Grenoble, France, 1991
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