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Journal Articles
- 2023
[j12]David S. Campo, Alexander Mosa, Yury Khudyakov:
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences. J. Comput. Biol. 30(4): 420-431 (2023)- 2022
- [j11]Walker Gussler, David S. Campo
, Zoya Dimitrova, Pavel Skums, Yury Khudyakov:
Primary case inference in viral outbreaks through analysis of intra-host variant population. BMC Bioinform. 23(1): 62 (2022) - 2020
- [j10]David S. Campo, Yury Khudyakov:
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences. BMC Bioinform. 21-S(18): 482 (2020) - 2018
- [j9]Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor, Guo-liang Xia, Yury Khudyakov:
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Bioinform. 34(1): 163-170 (2018) - [j8]Seth Sims, Atkinson G. Longmire, David S. Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, Yury Khudyakov:
Automated quality control for a molecular surveillance system. BMC Bioinform. 19-S(11): 358:1-358:15 (2018) - [j7]Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums:
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants. BMC Bioinform. 19-S(11): 360:1-360:10 (2018) - 2015
- [j6]Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion I. Mandoiu, David S. Campo, Zoya Dimitrova, Alex Zelikovsky, Yuri Khudyakov:
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. Bioinform. 31(5): 682-690 (2015) - 2012
- [j5]Pavel Skums, Zoya Dimitrova, David S. Campo, Gilberto Vaughan, Livia Rossi, Joseph C. Forbi, Jonny Yokosawa, Alex Zelikovsky, Yuri Khudyakov:
Efficient error correction for next-generation sequencing of viral amplicons. BMC Bioinform. 13(S-10): S6 (2012) - [j4]Irina V. Astrakhantseva, David S. Campo, Aufra Araujo, Chong-Gee Teo, Yuri Khudyakov, Saleem Kamili:
Differences in variability of hypervariable region 1 of hepatitis C virus (HCV) between acute and chronic stages of HCV infection. Silico Biol. 11(5-6): 163-173 (2012) - [j3]David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov:
Coordinated evolution of the Hepatitis B Virus Polymerase. Silico Biol. 11(5-6): 175-182 (2012) - [j2]Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov:
Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry. Silico Biol. 11(5-6): 183-192 (2012) - [j1]Pavel Skums, David S. Campo, Zoya Dimitrova, Gilberto Vaughan, Daryl T. Lau, Yuri Khudyakov:
Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response. Silico Biol. 11(5-6): 263-269 (2012)
Conference and Workshop Papers
- 2018
- [c15]Yubao Wu, Pavel Skums, Alex Zelikovsky, David Stiven Campo Rendon, Xueting Liao:
Predicting Opioid Epidemic by Using Twitter Data. ISBRA 2018: 314-318 - 2017
- [c14]Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums:
Efficient filtering algorithm for detection of genetic similarity between large genomic datasets. ICCABS 2017: 1 - 2015
- [c13]Inna Rytsareva, Seth Sims, Sriram P. Chockalingam, Srinivas Aluru, David S. Campo, Cansu Tetik, Sharma V. Thankachan, Yury Khudyakov, Yueli Zheng, Chirag Jain, Amanda Sue:
Efficient detection of viral transmission with threshold-based methods. ICCABS 2015: 1-6 - [c12]Pavel Skums, Olga Glebova, David S. Campo, Nana Li, Zoya Dimitrova, Seth Sims, Leonid Bunimovich, Alex Zelikovsky, Yury Khudyakov:
Algorithms for prediction of viral transmission using analysis of intra-host viral populations. ICCABS 2015: 1 - 2014
- [c11]David S. Campo, Zoya Dimitrova, Guo-liang Xia, Pavel Skums, Lilia Ganova-Raeva, Yuri Khudyakov:
New computational methods for assessing the genetic relatedness of close viral variants. ICCABS 2014: 1 - [c10]Pavel Skums, Alexander Artyomenko, Olga Glebova, Alex Zelikovsky, David S. Campo, Zoya Dimitrova, Yuri Khudyakov:
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data. ICCABS 2014: 1 - 2013
- [c9]David S. Campo, Zoya Dimitrova, Pavel Skums, Yuri Khudyakov:
Mutational robustness of hepatitis C virus intra-host variants. ICCABS 2013: 1 - [c8]Pavel Skums, David S. Campo, Zoya Dimitrova, Leonid Bunimovich, Yuri Khudyakov:
Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies. ICCABS 2013: 1 - [c7]Pavel Skums, Olga Glebova, Alex Zelikovsky, Zoya Dimitrova, David Stiven Campo Rendon, Lilia Ganova-Raeva, Yuri Khudyakov:
Alignment of DNA Mass-Spectral Profiles Using Network Flows. ISBRA 2013: 149-160 - 2011
- [c6]David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov:
Network of coordinated substitutions in the Hepatitis B virus polymerase. BIBM Workshops 2011: 64-71 - [c5]Irina V. Astrakhantseva, David S. Campo, Aufra Araujo, Chong-Gee Teo, Yuri Khudyakov, Saleem Kamili:
Variation in physicochemical properties of the hypervariable region 1 during acute and chronic stages of hepatitis C virus infection. BIBM Workshops 2011: 72-78 - [c4]Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov:
Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry. BIBM Workshops 2011: 79-86 - [c3]Pavel Skums, David S. Campo, Zoya Dimitrova, Gilberto Vaughan, Daryl T. Lau, Yuri Khudyakov:
Modelling differential interferon resistance of HCV quasispecies. BIBM Workshops 2011: 144-148 - 2008
- [c2]David S. Campo, Zoya Dimitrova, Yuri Khudyakov:
Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure. ISBRA 2008: 146-158 - [c1]Kelly Westbrooks, Irina Astrovskaya, David S. Campo, Yuri Khudyakov, Piotr Berman, Alexander Zelikovsky:
HCV Quasispecies Assembly Using Network Flows. ISBRA 2008: 159-170
Coauthor Index
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