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ORCIDJulien Rey
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2020 – today
- 2023
[j15]Florent Barbault
, Éric Brémond, Julien Rey, Pierre Tufféry, François Maurel:
DockSurf: A Molecular Modeling Software for the Prediction of Protein/Surface Adhesion. J. Chem. Inf. Model. 63(16): 5220-5231 (2023)- [j14]Julien Rey, Samuel Murail, Sjoerd Jacob de Vries, Philippe Derreumaux, Pierre Tufféry:
PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution. Nucleic Acids Res. 51(W1): 432-437 (2023) - 2021
- [j13]Chloé Quignot, Guillaume Postic, Hélène Bret, Julien Rey, Pierre Granger, Samuel Murail, Pablo Chacón, Jessica Andreani, Pierre Tufféry, Raphaël Guérois:
InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps. Nucleic Acids Res. 49(Webserver-Issue): 277-284 (2021) - [j12]Guillaume Postic, Jessica Andreani, Julien Marcoux, Victor Reys, Raphaël Guérois, Julien Rey, Emmanuelle Mouton-Barbosa, Yves Vandenbrouck, Sarah Cianférani, Odile Burlet-Schiltz, Gilles Labesse, Pierre Tufféry:
Proteo3Dnet: a web server for the integration of structural information with interactomics data. Nucleic Acids Res. 49(Webserver-Issue): 567-572 (2021)
2010 – 2019
- 2019
- [j11]Julien Rey, Inès Rasolohery, Pierre Tufféry, Frédéric Guyon, Gautier Moroy:
PatchSearch: a web server for off-target protein identification. Nucleic Acids Res. 47(Webserver-Issue): W365-W372 (2019) - [j10]Yasaman Karami, Julien Rey, Guillaume Postic, Samuel Murail, Pierre Tufféry, Sjoerd Jacob de Vries:
DaReUS-Loop: a web server to model multiple loops in homology models. Nucleic Acids Res. 47(Webserver-Issue): W423-W428 (2019) - 2018
- [j9]Chloé Quignot, Julien Rey, Jinchao Yu, Pierre Tufféry, Raphaël Guérois, Jessica Andreani:
InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs. Nucleic Acids Res. 46(Webserver-Issue): W408-W416 (2018) - 2017
- [j8]Sjoerd Jacob de Vries, Julien Rey, Christina E. M. Schindler, Martin Zacharias, Pierre Tufféry:
The pepATTRACT web server for blind, large-scale peptide-protein docking. Nucleic Acids Res. 45(Webserver-Issue): W361-W364 (2017) - 2016
- [j7]Alexis Lamiable, Pierre Thévenet, Julien Rey, Marek Vavrusa, Philippe Derreumaux, Pierre Tufféry:
PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex. Nucleic Acids Res. 44(Webserver-Issue): W449-W454 (2016) - [j6]Jinchao Yu, Marek Vavrusa, Jessica Andreani, Julien Rey, Pierre Tufféry, Raphaël Guérois:
InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information. Nucleic Acids Res. 44(Webserver-Issue): W542-W549 (2016) - 2015
- [j5]Frédéric Guyon, François Martz, Marek Vavrusa, Jérôme Bécot, Julien Rey, Pierre Tufféry:
BCSearch: fast structural fragment mining over large collections of protein structures. Nucleic Acids Res. 43(Webserver-Issue): W378-W382 (2015) - [j4]Céline M. Labbé, Julien Rey, David Lagorce, Marek Vavrusa, Jérôme Bécot, Olivier Sperandio, Bruno O. Villoutreix, Pierre Tufféry, Maria A. Miteva:
MTiOpenScreen: a web server for structure-based virtual screening. Nucleic Acids Res. 43(Webserver-Issue): W448-W454 (2015) - 2014
- [j3]Julien Rey, Patrick Deschavanne, Pierre Tufféry:
BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes. Database J. Biol. Databases Curation 2014 (2014) - [j2]Julien Rey, Patrick Deschavanne, Pierre Tufféry:
BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes. Database J. Biol. Databases Curation 2014 (2014) - [j1]Adrien Saladin, Julien Rey, Pierre Thévenet, Martin Zacharias, Gautier Moroy, Pierre Tufféry:
PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces. Nucleic Acids Res. 42(Webserver-Issue): 221-226 (2014)
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