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ORCIDCésar R. García-Jacas
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Journal Articles
- 2024
[j15]Greneter Cordoves-Delgado, César R. García-Jacas
:
Predicting Antimicrobial Peptides Using ESMFold-Predicted Structures and ESM-2-Based Amino Acid Features with Graph Deep Learning. J. Chem. Inf. Model. 64(10): 4310-4321 (2024)- 2023
- [j14]Longendri Aguilera-Mendoza, Sebastián Ayala-Ruano, Felix Martinez-Rios, Edgar Chávez, César R. García-Jacas, Carlos A. Brizuela, Yovani Marrero-Ponce:
StarPep Toolbox: an open-source software to assist chemical space analysis of bioactive peptides and their functions using complex networks. Bioinform. 39(8) (2023) - 2022
- [j13]César R. García-Jacas, Sergio Alejandro Pinacho-Castellanos, Luis A. García-González, Carlos A. Brizuela:
Do deep learning models make a difference in the identification of antimicrobial peptides? Briefings Bioinform. 23(3) (2022) - [j12]César R. García-Jacas, Luis A. García-González, Felix Martinez-Rios, Issac P. Tapia-Contreras, Carlos A. Brizuela:
Handcrafted versus non-handcrafted (self-supervised) features for the classification of antimicrobial peptides: complementary or redundant? Briefings Bioinform. 23(6) (2022) - 2021
- [j11]Sergio Alejandro Pinacho-Castellanos, César R. García-Jacas, Michael K. Gilson, Carlos A. Brizuela:
Alignment-Free Antimicrobial Peptide Predictors: Improving Performance by a Thorough Analysis of the Largest Available Data Set. J. Chem. Inf. Model. 61(6): 3141-3157 (2021) - [j10]Sergio Alejandro Pinacho-Castellanos, César R. García-Jacas, Michael K. Gilson, Carlos A. Brizuela:
Correction to Alignment-Free Antimicrobial Peptide Predictors: Improving Performance by a Thorough Analysis of the Largest Available Data Set. J. Chem. Inf. Model. 61(7): 3736 (2021) - 2020
- [j9]César R. García-Jacas, Yovani Marrero-Ponce, Carlos A. Brizuela, José Suárez-Lezcano, Felix Martinez-Rios:
Smoothed Spherical Truncation based on Fuzzy Membership Functions: Application to the Molecular Encoding. J. Comput. Chem. 41(3): 203-217 (2020) - [j8]César R. García-Jacas, Yovani Marrero-Ponce, Ricardo Vivas-Reyes, José Suárez-Lezcano, Felix Martinez-Rios, Julio E. Terán, Longendri Aguilera-Mendoza:
Distributed and multicore QuBiLS-MIDAS software v2.0: Computing chiral, fuzzy, weighted and truncated geometrical molecular descriptors based on tensor algebra. J. Comput. Chem. 41(12): 1209-1227 (2020) - [j7]Ernesto Contreras-Torres, Yovani Marrero-Ponce, Julio E. Terán, César R. García-Jacas, Carlos A. Brizuela, Juan Carlos Sánchez-Rodríguez:
MuLiMs-MCoMPAs: A Novel Multiplatform Framework to Compute Tensor Algebra-Based Three-Dimensional Protein Descriptors. J. Chem. Inf. Model. 60(2): 1042-1059 (2020) - [j6]Felix Martinez-Rios, Jose Antonio Marmolejo Saucedo, César R. García-Jacas, Alfonso Murillo-Suarez:
μ𝜃 -EGF: A New Multi-Thread and Nature-Inspired Algorithm for the Packing Problem. Mob. Networks Appl. 25(6): 2105-2117 (2020) - 2018
- [j5]César R. García-Jacas, Lisset Cabrera-Leyva, Yovani Marrero-Ponce, José Suárez-Lezcano, Fernando Cortés-Guzmán, Mario Pupo-Meriño, Ricardo Vivas-Reyes:
Choquet integral-based fuzzy molecular characterizations: when global definitions are computed from the dependency among atom/bond contributions (LOVIs/LOEIs). J. Cheminformatics 10(1): 51:1-51:17 (2018) - 2017
- [j4]Eli Fernández-de Gortari, César R. García-Jacas, Karina Martínez-Mayorga, José L. Medina-Franco:
Database fingerprint (DFP): an approach to represent molecular databases. J. Cheminformatics 9(1): 9:1-9:9 (2017) - [j3]José R. Valdés-Martiní, Yovani Marrero-Ponce, César R. García-Jacas, Karina Martínez-Mayorga, Stephen J. Barigye, Yasser Silveira Vaz d'Almeida, Hai Pham-The, Facundo Pérez-Giménez, Carlos A. Morell:
QuBiLS-MAS, open source multi-platform software for atom- and bond-based topological (2D) and chiral (2.5D) algebraic molecular descriptors computations. J. Cheminformatics 9(1): 35:1-35:26 (2017) - 2016
- [j2]César R. García-Jacas, Ernesto Contreras-Torres, Yovani Marrero-Ponce, Mario Pupo-Meriño, Stephen J. Barigye, Lisset Cabrera-Leyva:
Examining the predictive accuracy of the novel 3D N-linear algebraic molecular codifications on benchmark datasets. J. Cheminformatics 8(1): 10:1-10:16 (2016) - 2014
- [j1]César R. García-Jacas, Yovani Marrero-Ponce, Liesner Acevedo-Martínez, Stephen J. Barigye, José R. Valdés-Martiní, Ernesto Contreras-Torres:
QuBiLS-MIDAS: A parallel free-software for molecular descriptors computation based on multilinear algebraic maps. J. Comput. Chem. 35(18): 1395-1409 (2014)
Conference and Workshop Papers
- 2017
- [c1]Luis A. García-González, César R. García-Jacas, Liesner Acevedo-Martínez, Rafael A. Trujillo-Rasúa, Dirk Roose:
Self-Scheduling for a Heterogeneous Distributed Platform. PARCO 2017: 232-241
Coauthor Index
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