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ORCIDDavid R. Penas
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2020 – today
- 2024
[j12]Paul F. Lang
, David R. Penas, Julio R. Banga, Daniel Weindl, Béla Novák:
Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells. PLoS Comput. Biol. 20(1) (2024)- [j11]David R. Penas, Meysam Hashemi, Viktor K. Jirsa, Julio R. Banga:
Parameter estimation in a whole-brain network model of epilepsy: Comparison of parallel global optimization solvers. PLoS Comput. Biol. 20(7): 1011642 (2024) - 2023
- [j10]Laura Davila-Pena, David R. Penas, Balbina Casas-Méndez:
A new two-phase heuristic for a problem of food distribution with compartmentalized trucks and trailers. Int. Trans. Oper. Res. 30(2): 1031-1064 (2023) - [j9]Brais González-Rodríguez, Joaquín Ossorio-Castillo, Julio González-Díaz, Ángel Manuel González-Rueda, David R. Penas, Diego Rodríguez Martínez:
Computational advances in polynomial optimization: RAPOSa, a freely available global solver. J. Glob. Optim. 85(3): 541-568 (2023) - [j8]Ahmed Taha, Mauricio Patón, David R. Penas, Julio R. Banga, Jorge Rodríguez:
Optimal evaluation of energy yield and driving force in microbial metabolic pathway variants. PLoS Comput. Biol. 19(7) (2023) - 2020
- [j7]David R. Penas, Marcos Raydan:
A metaheuristic penalty approach for the starting point in nonlinear programming. RAIRO Oper. Res. 54(2): 451-469 (2020)
2010 – 2019
- 2019
- [j6]David R. Penas, Andrés Gómez, Basilio B. Fraguela, María J. Martín, Santiago Cerviño:
Enhanced global optimization methods applied to complex fisheries stock assessment models. Appl. Soft Comput. 77: 50-66 (2019) - [j5]Patricia González, Pablo Argüeso-Alejandro, David R. Penas, Xoán C. Pardo, Julio Saez-Rodriguez, Julio R. Banga, Ramón Doallo:
Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology. J. Supercomput. 75(7): 3471-3498 (2019) - 2018
- [j4]Patricia González, David R. Penas, Xoán C. Pardo, Julio R. Banga, Ramón Doallo:
Multimethod optimization in the cloud: A case-study in systems biology modelling. Concurr. Comput. Pract. Exp. 30(12) (2018) - [c6]Patricia González, David R. Penas, Xoán C. Pardo, Julio R. Banga, Ramón Doallo:
Multimethod Optimization for Reverse Engineering of Complex Biological Networks. PBio@EuroMPI 2018: 11-18 - 2017
- [j3]David R. Penas, Patricia González, Jose A. Egea, Ramón Doallo, Julio R. Banga:
Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy. BMC Bioinform. 18(1): 52:1-52:24 (2017) - [j2]Diego Teijeiro, Xoán C. Pardo, David R. Penas, Patricia González, Julio R. Banga, Ramón Doallo:
A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology. Clust. Comput. 20(3): 1937-1950 (2017) - [c5]Patricia González, Xoán C. Pardo, David R. Penas, Diego Teijeiro, Julio R. Banga, Ramón Doallo:
Using the Cloud for parameter estimation problems: comparing Spark vs MPI with a case-study. CCGrid 2017: 797-806 - 2016
- [c4]Diego Teijeiro, Xoán C. Pardo, David R. Penas, Patricia González, Julio R. Banga, Ramón Doallo:
Evaluation of Parallel Differential Evolution Implementations on MapReduce and Spark. Euro-Par Workshops 2016: 397-408 - 2015
- [j1]David R. Penas, Julio R. Banga, Patricia González, Ramon Doallo:
Enhanced parallel Differential Evolution algorithm for problems in computational systems biology. Appl. Soft Comput. 33: 86-99 (2015) - [c3]David R. Penas, Patricia González, Jose A. Egea, Julio R. Banga, Ramon Doallo:
Parallel Metaheuristics in Computational Biology: An Asynchronous Cooperative Enhanced Scatter Search Method. ICCS 2015: 630-639 - 2014
- [c2]David R. Penas, Julio R. Banga, Patricia González, Ramon Doallo:
A Parallel Differential Evolution Algorithm for Parameter Estimation in Dynamic Models of Biological Systems. PACBB 2014: 173-181 - 2012
- [c1]José Luis Iglesias Allones, David R. Penas, Maria Taboada, Diego Martínez Hernández, Serafín Tellado:
A Study of Semantic Proximity between Archetype Terms Based on SNOMED CT Relationships. ProHealth/KR4HC 2012: 98-112
Coauthor Index
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