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ORCIDJing Huang 0004
Person information
- affiliation: Westlake Institute for Advanced Study, Institute for Biology, Hangzhou, China
- affiliation (former): University of Maryland, School of Pharmacy, Baltimore, USA
- affiliation (former): National Institutes of Health, Bethesda, USA
Other persons with the same name
- Jing Huang — disambiguation page
- Jing Huang 0001 — SUN Microsystems, Santa Clara, CA, USA (and 1 more)
- Jing Huang 0002
![[0000-0003-1438-5071]](https://dblp.uni-trier.de./img/orcid-mark.12x12.png "0000-0003-1438-5071")
— Jilin University, School of Computer Science and Technology, Changchun, China - Jing Huang 0003 — Beijing University of Technology, Institute of Artificial Intelligence and Robotics, China
- Jing Huang 0005 — Zhejiang Gongshang University, School of Information and Electronic Engineering, Hangzhou, China (and 1 more)
- Jing Huang 0006 — Beijing Normal University, State Key Laboratory of Cognitive Neuroscience and Learning / IDG/McGovern Institute for Brain Research, China (and 1 more)
- Jing Huang 0007 — University of Victoria, Department of Mathematics and Statistics, BC, Canada (and 1 more)
- Jing Huang 0008 — Qualcomm, Santa Clara, CA, USA (and 2 more)
- Jing Huang 0009 — Wuhan Polytechnic, Wuhan City, China
- Jing Huang 0010 — Nanyang Technological University, School of EEE, VIRTUS IC Design Centre of Excellence, Singapore
- Jing Huang 0011 — South China University of Technology, School of Mathematics, Guangzhou, China (and 1 more)
- Jing Huang 0012 — Hunan University, College of Computer Science and Electronic Engineering, Key Laboratory for Embedded and Network Computing, Changsha, China
- Jing Huang 0013 — Wuhan University of Technology, School of Computer Science and Technology, Wuhan, China
- Jing Huang 0014 — Stanford University, Department of Computer Science, CA, USA (and 1 more)
- Jing Huang 0015 — Hunan University, College of Mechanical and Vehicle Engineering, State Key Laboratory of Advanced Design and Manufacturing for Vehicle Body, Changsha, China
- Jing Huang 0016 — Hohai University, State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Nanjing, China
- Jing Huang 0017 — Sichuan University, School of Public Administration, Chengdu, China
- Jing Huang 0018 — Southern Medical University, Department of Biomedical Engineering, Guangdong Provincial Key Laboratory of Medical Image Processing, Guangzhou, China (and 1 more)
- Jing Huang 0019 — JD AI Research and Platform, Mountain View, CA, USA (and 2 more)
- Jing Huang 0020 — Facebook, Menlo Park, CA, USA (and 1 more)
- Jing Huang 0021 — University of Pennsylvania, Perelman School of Medicine, Departmant of Biostatistics, Epidemiology and Informatics, Philadelphia, PA, USA
- Jing Huang 0022 — Iowa State University, Department of Electrical and Computer Engineering, Ames, IA, USA
- Jing Huang 0023 — University of Illinois at Chicago, Department of Electrical and Computer Engineering, Chicago, IL, USA
- Jing Huang 0024 — Veracyte, Department of Research & Development, San Francisco, CA, USA (and 1 more)
- Jing Huang 0025 — University of Virginia, Department of Aerospace and Mechanical Engineering, Charlottesville, VA, USA (and 1 more)
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Journal Articles
- 2024
[j14]Tengyu Xie, Jing Huang:
Can Protein Structure Prediction Methods Capture Alternative Conformations of Membrane Transporters? J. Chem. Inf. Model. 64(8): 3524-3536 (2024)- [j13]Runtong Qian, Jing Xue, You Xu, Jing Huang:
Alchemical Transformations and Beyond: Recent Advances and Real-World Applications of Free Energy Calculations in Drug Discovery. J. Chem. Inf. Model. 64(19): 7214-7237 (2024) - 2023
- [j12]Zilin Song, Ye Ding, Jing Huang:
Constant advance replicas method for locating minimum energy paths and transition states. J. Comput. Chem. 44(26): 2042-2057 (2023) - [j11]Wenyi Zhang, Kaiyue Zhang, Jing Huang:
A Simple Way to Incorporate Target Structural Information in Molecular Generative Models. J. Chem. Inf. Model. 63(12): 3719-3730 (2023) - 2022
- [j10]Abhishek A. Kognole, Jumin Lee, Sang-Jun Park, Sunhwan Jo, Payal Chatterjee, Justin A. Lemkul, Jing Huang, Alexander D. MacKerell Jr., Wonpil Im:
CHARMM-GUI Drude prepper for molecular dynamics simulation using the classical Drude polarizable force field. J. Comput. Chem. 43(5): 359-375 (2022) - [j9]Wenyi Zhang, Jing Huang:
EViS: An Enhanced Virtual Screening Approach Based on Pocket-Ligand Similarity. J. Chem. Inf. Model. 62(3): 498-510 (2022) - 2020
- [j8]Ye Ding, You Xu, Cheng Qian, Jinfeng Chen, Jian Zhu, Houhou Huang, Yi Shi, Jing Huang:
Predicting partition coefficients of drug-like molecules in the SAMPL6 challenge with Drude polarizable force fields. J. Comput. Aided Mol. Des. 34(4): 421-435 (2020) - 2018
- [j7]Samarjeet Prasad, Jing Huang, Qiao Zeng, Bernard R. Brooks:
An explicit-solvent hybrid QM and MM approach for predicting pKa of small molecules in SAMPL6 challenge. J. Comput. Aided Mol. Des. 32(10): 1191-1201 (2018) - [j6]Jing Huang, Justin A. Lemkul, Peter K. Eastman, Alexander D. MacKerell Jr.:
Molecular dynamics simulations using the drude polarizable force field on GPUs with OpenMM: Implementation, validation, and benchmarks. J. Comput. Chem. 39(21): 1682-1689 (2018) - 2017
- [j5]Juyong Lee, Florentina Tofoleanu, Frank C. Pickard IV, Gerhard König, Jing Huang, Ana Damjanovic, Minkyung Baek, Chaok Seok, Bernard R. Brooks:
Absolute binding free energy calculations of CBClip host-guest systems in the SAMPL5 blind challenge. J. Comput. Aided Mol. Des. 31(1): 71-85 (2017) - [j4]Florentina Tofoleanu, Juyong Lee, Frank C. Pickard IV, Gerhard König, Jing Huang, Minkyung Baek, Chaok Seok, Bernard R. Brooks:
Absolute binding free energies for octa-acids and guests in SAMPL5 - Evaluating binding free energies for octa-acid and guest complexes in the SAMPL5 blind challenge. J. Comput. Aided Mol. Des. 31(1): 107-118 (2017) - 2016
- [j3]Gerhard König, Frank C. Pickard IV, Jing Huang, Andrew C. Simmonett, Florentina Tofoleanu, Juyong Lee, Pavlo O. Dral, Samarjeet Prasad, Michael R. Jones, Yihan Shao, Walter Thiel, Bernard R. Brooks:
Calculating distribution coefficients based on multi-scale free energy simulations: an evaluation of MM and QM/MM explicit solvent simulations of water-cyclohexane transfer in the SAMPL5 challenge. J. Comput. Aided Mol. Des. 30(11): 989-1006 (2016) - [j2]Sirish Kaushik Lakkaraju, Justin A. Lemkul, Jing Huang, Alexander D. MacKerell Jr.:
DIRECT-ID: An automated method to identify and quantify conformational variations - application to β2-adrenergic GPCR. J. Comput. Chem. 37(4): 416-425 (2016) - 2013
- [j1]Jing Huang, Alexander D. MacKerell Jr.:
CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data. J. Comput. Chem. 34(25): 2135-2145 (2013)
Informal and Other Publications
- 2023
- [i1]Peter K. Eastman, Raimondas Galvelis, Raúl P. Peláez, Charlles R. A. Abreu, Stephen E. Farr, Emilio Gallicchio, Anton Gorenko, Michael M. Henry, Frank Hu, Jing Huang, Andreas Krämer, Julien Michel, Joshua A. Mitchell, Vijay S. Pande, João P. G. L. M. Rodrigues, Jaime Rodríguez-Guerra, Andrew C. Simmonett, Jason M. Swails, Ivy Zhang, John D. Chodera, Gianni De Fabritiis, Thomas E. Markland:
OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials. CoRR abs/2310.03121 (2023)
Coauthor Index
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