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ORCIDEric C. Rouchka
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2020 – today
- 2020
[j34]Jae Yeon Hwang
, Sungbo Jung, Tae Lim Kook, Eric C. Rouchka, Jinwoong Bok, Juw Won Park:
rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation. Nucleic Acids Res. 48(Webserver-Issue): W300-W306 (2020)
2010 – 2019
- 2018
- [i1]Tyler Weirick, Patrick J. Trainor, Eric C. Rouchka, Andrew P. DeFilippis, Shizuka Uchida:
DRETools: A tool-suite for differential RNA editing detection. F1000Research 7: 1366 (2018) - 2017
- [j33]Eric C. Rouchka, Julia Chariker, David Tieri, Juw Won Park:
Correction to: Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2017: bioinformatics. BMC Bioinform. 18(1): 490 (2017) - [j32]Eric C. Rouchka, Julia H. Chariker, David Tieri, Juw Won Park, Shreedharkumar D. Rajurkar, Vikas Singh, Nishchal K. Verma, Yan Cui, Mark L. Farman, Bradford Condon, Neil Moore, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Daniel R. Harris, Patrick Calie, Eun Kyong Shin, Robert L. Davis, Arash Shaban-Nejad, Joshua M. Mitchell, Robert M. Flight, Qing Jun Wang, Richard M. Higashi, Teresa W.-M. Fan, Andrew N. Lane, Hunter N. B. Moseley, Liangqun Lu, Bernie J. Daigle, Xi Chen, Andrey Smelter, Li Chen, Bailey K. Phan, Nathaniel J. Serpico, Ethan G. Toney, Caroline E. Melton, Jennifer R. Mandel, Bernie J. Daigle Jr., Hao Chen, Kazi I. Zaman, Ramin Homayouni, Patrick J. Trainor, Samantha M. Carlisle, Andrew P. DeFilippis, Shesh N. Rai:
Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017. BMC Bioinform. 18(S-9) (2017) - [j31]Julia H. Chariker, Yihang Zhang, John R. Pani, Eric C. Rouchka:
Identification of successful mentoring communities using network-based analysis of mentor-mentee relationships across Nobel laureates. Scientometrics 111(3): 1733-1749 (2017) - [c21]Mohamed Chaabane, Eric C. Rouchka, Juw Won Park:
Circular RNA Detection from High-throughput Sequencing. RACS 2017: 19-24 - 2016
- [j30]Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffrey Rubnitz, Jatinder Lamba, Bernie J. Daigle Jr., Deborah Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Sen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas J. Jackson, John F. Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles A. Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L. Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M. Scotty Depriest, James N. MacLeod, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian Valentine, Naga Satya Venkateswara Ra Nagisetty, Rony Jose, Robert W. Rooney, David Hains:
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016. BMC Bioinform. 17(S-10) (2016) - [j29]Juw Won Park, Sungbo Jung, Eric C. Rouchka, Yu-Ting Tseng, Yi Xing:
rMAPS: RNA map analysis and plotting server for alternative exon regulation. Nucleic Acids Res. 44(Webserver-Issue): W333-W338 (2016) - [c20]Ernur Saka, Benjamin J. Harrison, Kirk West, Jeffrey C. Petruska, Eric C. Rouchka:
Region-based custom chip description formats for reanalysis of publicly available affymetrix® genechip® data sets. ICCABS 2016: 1 - 2015
- [j28]Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison:
Proceedings of the Fourteenth Annual UT- KBRIN Bioinformatics Summit 2015. BMC Bioinform. 16(S15): I1 (2015) - [c19]Sen Yao, Robert M. Flight, Eric C. Rouchka, Hunter N. B. Moseley:
A less biased analysis of metalloproteins' coordination geometries. BCB 2015: 493-494 - 2014
- [j27]Eric C. Rouchka, Julia H. Chariker:
Proceedings of the Thirteenth Annual UT- KBRIN Bioinformatics Summit 2014. BMC Bioinform. 15(S-10): I1 (2014) - [j26]Benjamin J. Harrison, Robert M. Flight, Abdallah M. Eteleeb, Eric C. Rouchka, Jeffrey C. Petruska:
UTR extension and alternate polyadenylation in neuroplasticity: an emerging paradigm? BMC Bioinform. 15(S-10): P11 (2014) - [j25]Yan Zhang, Michelle Barati, Ignacio Munoz, Ming Li, Danny Wilkey, Eric C. Rouchka, Michael Merchant:
Transcriptomic characterization of short duration endoplasmic reticulum stress on cultured human proximal tubule cells. BMC Bioinform. 15(S-10): P5 (2014) - [c18]Abdallah M. Eteleeb, Hunter N. B. Moseley, Eric C. Rouchka:
A comparison of combined p-value methods for gene differential expression using RNA-seq data. BCB 2014: 417-425 - 2013
- [j24]Eric C. Rouchka, Robert M. Flight:
Proceedings of the Twelfth Annual UT-ORNL-KBRIN Bioinformatics Summit 2013. BMC Bioinform. 14(S-17): A1 (2013) - [c17]Abdallah Eteleeb, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka:
An Island-Based Approach for Differential Expression Analysis. BCB 2013: 419 - 2012
- [j23]Fahim Mohammad, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka:
AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities. BMC Bioinform. 13: 229 (2012) - [j22]Eric C. Rouchka, Robert M. Flight, Hunter N. B. Moseley:
Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012. BMC Bioinform. 13(S-12): A1 (2012) - [j21]Gopinath Rajadinakaran, Huifang Sun, Claire Rinehart, Eric C. Rouchka, Michael E. Smith:
Regulation of cell proliferation and apoptosis by growth hormone during zebrafish auditory hair cell regeneration. BMC Bioinform. 13(S-12): A3 (2012) - [j20]Benjamin J. Harrison, Robert M. Flight, Abdallah Eteleeb, Eric C. Rouchka, Jeffrey C. Petruska:
RNASeq profiling of UTR expression during neuronal plasticity. BMC Bioinform. 13(S-12): A4 (2012) - [c16]Ernur Saka, Eric C. Rouchka:
Poster: Image registration and visualization tool for in-situ gene expression images. ICCABS 2012: 1 - [c15]Marc Beck, Eric C. Rouchka, Roman V. Yampolskiy:
Finding Data in DNA: Computer Forensic Investigations of Living Organisms. ICDF2C 2012: 204-219 - 2011
- [j19]Eric C. Rouchka, Robert M. Flight, Ramin Homayouni:
Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011. BMC Bioinform. 12(S-7): A1 (2011) - [j18]Robert M. Flight, Jeffrey C. Petruska, Benjamin J. Harrison, Eric C. Rouchka:
categoryCompare: high-throughput data meta-analysis using gene annotations. BMC Bioinform. 12(S-7): A16 (2011) - [j17]John Kirtley, Eric C. Rouchka, Robert M. Flight, Palaniappan Sethu, John W. Eaton, Robert S. Keynton:
Meta-analysis of gene expression changes in response to radiation exposure. BMC Bioinform. 12(S-7): A20 (2011) - [j16]Dazhuo Li, Eric C. Rouchka:
Integrative biclustering of heterogeneous datasets using a Bayesian nonparametric model with application to chemogenomics. BMC Bioinform. 12(S-7): A6 (2011) - [j15]Rami N. Mahdi, Eric C. Rouchka:
Reduced HyperBF Networks: Regularization by Explicit Complexity Reduction and Scaled Rprop-Based Training. IEEE Trans. Neural Networks 22(5): 673-686 (2011) - [c14]Fahim Mohammad, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka:
A Heuristic Algorithm for Detecting Intercellular Interactions. BIBE 2011: 1-8 - [c13]Fahim Mohammad, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka:
Interval Trees for Detection of Overlapping Genetic Entities. BIBE 2011: 278-281 - 2010
- [j14]Christy M. Gearheart, Benjamin Arazi, Eric C. Rouchka:
DNA-based random number generation in security circuitry. Biosyst. 100(3): 208-214 (2010) - [j13]Eric C. Rouchka, Robert M. Flight, Claire Rinehart:
Proceedings of the ninth annual UT-ORNL-KBRIN Bioinformatics Summit 2010. BMC Bioinform. 11(S-4): I1 (2010) - [j12]Bing Wang, Fahim Mohammad, Jun Zhang, Xinmin Yin, Eric C. Rouchka, Xiang Zhang:
Statistical analysis of multiple significance test methods for differential proteomics. BMC Bioinform. 11(S-4): P30 (2010) - [j11]Christy M. Gearheart, Eric C. Rouchka, Benjamin Arazi:
Design of a DNA-based shift register. BMC Bioinform. 11(S-4): P31 (2010) - [j10]Eric C. Rouchka, Diego E. Montoya-Durango, Vilius Stribinskis, Kenneth S. Ramos, Ted Kalbfleisch:
Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data. BMC Bioinform. 11(S-9): S12 (2010) - [c12]Dazhuo Li, Eric C. Rouchka, Patrick Shafto:
Phylogenomic Analysis Using Bayesian Congruence Measuring. BICoB 2010: 30-37 - [c11]Dazhuo Li, Fahim Mohammad, Eric C. Rouchka:
A Bayesian Nonparametric Model for Joint Relation Integration and Domain Clustering. ICMLA 2010: 969-974
2000 – 2009
- 2009
- [j9]Eric C. Rouchka, Julia Krushkal:
Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009. BMC Bioinform. 10(S-7) (2009) - [c10]Eric C. Rouchka, Xiangping Wang, James H. Graham, Nigel G. F. Cooper:
Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements. BICoB 2009: 353-361 - [c9]Rami N. Mahdi, Eric C. Rouchka:
Feature Selection in Cancer Classification from mRNA Data Based on Localized Dimension Reduction. ICMLA 2009: 443-448 - [c8]Dar-Jen Chang, Ahmed H. Desoky, Ming Ouyang, Eric C. Rouchka:
Compute Pairwise Manhattan Distance and Pearson Correlation Coefficient of Data Points with GPU. SNPD 2009: 501-506 - 2008
- [j8]Christy M. Bogard, Eric C. Rouchka, Benjamin Arazi:
Random number generation for DNA-based security circuitry. BMC Bioinform. 9(S-7) (2008) - [j7]Rami N. Mahdi, Eric C. Rouchka:
Buffered codons in human transcriptional units. BMC Bioinform. 9(S-7) (2008) - [j6]Joseph Morris, Eric C. Rouchka, David Schultz:
Techniques for the analysis of trichome Pelagonium xhortorum expressed sequence tags. BMC Bioinform. 9(S-7) (2008) - [j5]Eric C. Rouchka, Julia Krushkal, Daniel Goldowitz:
Proceedings of the Seventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2008. BMC Bioinform. 9(S-7) (2008) - [c7]Rami N. Mahdi, Eric C. Rouchka:
Model Based Unsupervised Learning Guided by Abundant Background Samples. ICMLA 2008: 203-210 - 2007
- [j4]Eric C. Rouchka, C. Timothy Hardin:
rMotifGen: random motif generator for DNA and protein sequences. BMC Bioinform. 8 (2007) - [c6]Kuo-Chen Li, Dar-Jen Chang, Eric C. Rouchka, Yuan Yan Chen:
Biological Sequence Mining Using Plausible Neural Network and its Application to Exon/intron Boundaries Prediction. CIBCB 2007: 165-169 - 2006
- [j3]Eric C. Rouchka:
Aligning DNA sequences using dynamic programming. ACM Crossroads 13(1): 9 (2006) - 2005
- [j2]Eric C. Rouchka, Abdelnaby Khalyfa, Nigel G. F. Cooper:
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays. BMC Bioinform. 6: 175 (2005) - [c5]I. Elizabeth Cha, Eric C. Rouchka:
Comparison of Current BLAST Software on Nucleotide Sequences. IPDPS 2005 - [c4]C. Timothy Hardin, Eric C. Rouchka:
DNA motif detection using particle swarm optimization and expectation-maximization. SIS 2005: 181-184 - 2003
- [j1]William A. Thompson, Eric C. Rouchka, Charles E. Lawrence:
Gibbs Recursive Sampler: finding transcription factor binding sites. Nucleic Acids Res. 31(13): 3580-3585 (2003) - 2000
- [c3]Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States:
UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences. ISMB 2000: 218-227
1990 – 1999
- 1999
- [c2]Thomas W. Blackwell, Eric C. Rouchka, David J. States:
Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions. ISMB 1999: 54-59 - 1998
- [c1]Eric C. Rouchka, David J. States:
Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis. ISMB 1998: 140-147
Coauthor Index
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