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Journal Articles
- 2019
[j9]Seyed Ali Madani Tonekaboni, Venkata Satya Kumar Manem, Nehme El-Hachem
, Benjamin Haibe-Kains:
SIGN: similarity identification in gene expression. Bioinform. 35(22): 4830-4833 (2019)- 2018
- [j8]Fupan Yao, Seyed Ali Madani Tonekaboni, Zhaleh Safikhani, Petr Smirnov, Nehme El-Hachem, Mark Freeman, Venkata Satya Kumar Manem, Benjamin Haibe-Kains:
Tissue specificity of in vitro drug sensitivity. J. Am. Medical Informatics Assoc. 25(2): 158-166 (2018) - [j7]Petr Smirnov, Victor Kofia, Alexander Maru, Mark Freeman, Chantal Ho, Nehme El-Hachem, George-Alexandru Adam, Wail Ba-alawi, Zhaleh Safikhani, Benjamin Haibe-Kains:
PharmacoDB: an integrative database for mining in vitro anticancer drug screening studies. Nucleic Acids Res. 46(Database-Issue): D994-D1002 (2018) - 2016
- [j6]Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron:
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17(4): 603-615 (2016) - [j5]Petr Smirnov, Zhaleh Safikhani, Nehme Hachem, Dong Wang, Adrian She, Catharina Olsen, Mark Freeman, Heather Marie Selby, Deena M. A. Gendoo, Patrick Grossmann, Andrew H. Beck, Hugo J. W. L. Aerts, Mathieu Lupien, Anna Goldenberg, Benjamin Haibe-Kains:
PharmacoGx: an R package for analysis of large pharmacogenomic datasets. Bioinform. 32(8): 1244-1246 (2016) - [j4]Zhaleh Safikhani, Nehme Hachem, Petr Smirnov, Mark Freeman, Anna Goldenberg, Nicolai J. Birkbak, Andrew H. Beck, Hugo J. W. L. Aerts, John Quackenbush, Benjamin Haibe-Kains:
Safikhani et al. reply. Nat. 540(7631): E2-E4 (2016) - 2013
- [j3]Nicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Nehme Hachem, Gianluca Bontempi, Benjamin Haibe-Kains:
mRMRe: an R package for parallelized mRMR ensemble feature selection. Bioinform. 29(18): 2365-2368 (2013) - [j2]Simon Papillon-Cavanagh, Nicolas De Jay, Nehme Hachem, Catharina Olsen, Gianluca Bontempi, Hugo J. W. L. Aerts, John Quackenbush, Benjamin Haibe-Kains:
Research and applications: Comparison and validation of genomic predictors for anticancer drug sensitivity. J. Am. Medical Informatics Assoc. 20(4): 597-602 (2013) - [j1]Benjamin Haibe-Kains, Nehme El-Hachem, Nicolai J. Birkbak, Andrew C. Jin, Andrew H. Beck, Hugo J. W. L. Aerts, John Quackenbush:
Inconsistency in large pharmacogenomic studies. Nat. 504(7480): 389-393 (2013)
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