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Journal Articles
- 2023
[j10]Samo Lesnik
, Urban Bren, Tatiana Domratcheva, Ana-Nicoleta Bondar:
Fentanyl and the Fluorinated Fentanyl Derivative NFEPP Elicit Distinct Hydrogen-Bond Dynamics of the Opioid Receptor. J. Chem. Inf. Model. 63(15): 4732-4748 (2023)- 2021
- [j9]Malte Siemers, Ana-Nicoleta Bondar:
Interactive Interface for Graph-Based Analyses of Dynamic H-Bond Networks: Application to Spike Protein S. J. Chem. Inf. Model. 61(6): 2998-3014 (2021) - [j8]Thomas Giannos, Samo Lesnik, Urban Bren, Milan Hodoscek, Tatiana Domratcheva, Ana-Nicoleta Bondar:
CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs. J. Chem. Inf. Model. 61(8): 3964-3977 (2021) - [j7]Éva Bertalan, Elena Lesca, Gebhard F. X. Schertler, Ana-Nicoleta Bondar:
C-Graphs Tool with Graphical User Interface to Dissect Conserved Hydrogen-Bond Networks: Applications to Visual Rhodopsins. J. Chem. Inf. Model. 61(11): 5692-5707 (2021) - 2020
- [j6]Oskar Klaja, James A. Frank, Dirk Trauner, Ana-Nicoleta Bondar:
Potential energy function for a photo-switchable lipid molecule. J. Comput. Chem. 41(27): 2336-2351 (2020) - [j5]Oskar Klaja, James A. Frank, Dirk Trauner, Ana-Nicoleta Bondar:
Cover Image. J. Comput. Chem. 41(27): C1 (2020) - [j4]Samo Lesnik, Milan Hodoscek, Urban Bren, Christoph Stein, Ana-Nicoleta Bondar:
Potential Energy Function for Fentanyl-Based Opioid Pain Killers. J. Chem. Inf. Model. 60(7): 3566-3576 (2020) - 2019
- [j3]Konstantina Karathanou, Ana-Nicoleta Bondar:
Using Graphs of Dynamic Hydrogen-Bond Networks To Dissect Conformational Coupling in a Protein Motor. J. Chem. Inf. Model. 59(5): 1882-1896 (2019) - 2018
- [j2]Suliman Adam, Michaela Knapp-Mohammady, Jun Yi, Ana-Nicoleta Bondar:
Revised CHARMM force field parameters for iron-containing cofactors of photosystem II. J. Comput. Chem. 39(1): 7-20 (2018) - 2013
- [j1]Norbert Lindow, Daniel Baum, Ana-Nicoleta Bondar, Hans-Christian Hege:
Exploring cavity dynamics in biomolecular systems. BMC Bioinform. 14(S-19): S5 (2013)
Conference and Workshop Papers
- 2012
- [c1]Norbert Lindow, Daniel Baum, Ana-Nicoleta Bondar, Hans-Christian Hege:
Dynamic channels in biomolecular systems: Path analysis and visualization. BioVis 2012: 99-106
Coauthor Index
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