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Journal Articles
- 2015
[j3]Haibin Liu, Karin Verspoor
, Donald C. Comeau, Andrew D. MacKinlay, W. John Wilbur:
Optimizing graph-based patterns to extract biomedical events from the literature. BMC Bioinform. 16(S16): S2 (2015)- 2014
- [j2]David Martínez, Graham Pitson, Andrew MacKinlay, Lawrence Cavedon:
Cross-hospital portability of information extraction of cancer staging information. Artif. Intell. Medicine 62(1): 11-21 (2014) - 2012
- [j1]Andrew MacKinlay, David Martínez, Timothy Baldwin:
Detecting modification of biomedical events using a deep parsing approach. BMC Medical Informatics Decis. Mak. 12(S-1): S4 (2012)
Conference and Workshop Papers
- 2018
- [c24]Antonio Jimeno-Yepes, Andrew D. MacKinlay, Natalie Gunn, Christine Schieber, Noel Faux, Matthew Downton, Benjamin Goudey, Richard L. Martin:
A hybrid approach for automated mutation annotation of the extended human mutation landscape in scientific literature. AMIA 2018 - 2017
- [c23]Andrew MacKinlay, Hafsah Aamer, Antonio Jimeno-Yepes:
Detection of adverse drug reactions using medical named entities on Twitter. AMIA 2017 - [c22]Quan Tran, Andrew MacKinlay, Antonio Jimeno-Yepes:
Named Entity Recognition with Stack Residual LSTM and Trainable Bias Decoding. IJCNLP(1) 2017: 566-575 - 2016
- [c21]Pin Huang, Andrew MacKinlay, Antonio Jimeno-Yepes:
Syndromic Surveillance using Generic Medical Entities on Twitter. ALTA 2016: 35-44 - [c20]Bo Han, Antonio Jimeno-Yepes, Andrew MacKinlay, Lianhua Chi:
Temporal Modelling of Geospatial Words in Twitter. ALTA 2016: 133-137 - [c19]Antonio Jimeno-Yepes, Andrew MacKinlay:
NER for Medical Entities in Twitter using Sequence to Sequence Neural Networks. ALTA 2016: 138-142 - 2015
- [c18]Antonio Jimeno-Yepes, Andrew MacKinlay, Bo Han:
Investigating Public Health Surveillance using Twitter. BioNLP@IJCNLP 2015: 164-170 - [c17]Andrew MacKinlay, Antonio Jimeno-Yepes, Bo Han:
Identification and Analysis of Medical Entity Co-occurrences in Twitter. DTMBIO@CIKM 2015: 22 - [c16]Antonio Jimeno-Yepes, Andrew MacKinlay, Bo Han, Qiang Chen:
Identifying Diseases, Drugs, and Symptoms in Twitter. MedInfo 2015: 643-647 - 2014
- [c15]Antonio Jimeno-Yepes, Andrew MacKinlay, Justin Bedo, Rahil Garvani, Qiang Chen:
Deep Belief Networks and Biomedical Text Categorisation. ALTA 2014: 123-127 - [c14]Bo Han, Antonio Jimeno-Yepes, Andrew MacKinlay, Qiang Chen:
Identifying Twitter Location Mentions. ALTA 2014: 157-162 - [c13]Dominique Estival, Steve Cassidy, Karin Verspoor, Andrew MacKinlay, Denis Burnham:
Integrating UIMA with Alveo, a human communication science virtual laboratory. OIAF4HLT@COLING 2014: 12-22 - 2013
- [c12]Andrew MacKinlay, David Martínez, Antonio Jimeno-Yepes, Haibin Liu, W. John Wilbur, Karin Verspoor:
Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data. BioNLP@ACL (Shared Task) 2013: 35-44 - [c11]Haibin Liu, Karin Verspoor, Donald C. Comeau, Andrew MacKinlay, W. John Wilbur:
Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics. BioNLP@ACL (Shared Task) 2013: 76-85 - [c10]Timothy Baldwin, Paul Cook, Marco Lui, Andrew MacKinlay, Li Wang:
How Noisy Social Media Text, How Diffrnt Social Media Sources? IJCNLP 2013: 356-364 - [c9]Karin Verspoor, Andrew MacKinlay, Judith D. Cohn, Michael E. Wall:
Detection of Protein Catalytic Sites in the Biomedical Literature. Pacific Symposium on Biocomputing 2013: 433-444 - 2012
- [c8]Andrew D. MacKinlay, Karin M. Verspoor:
Extracting structured information from free-text medication prescriptions using dependencies. DTMBIO@CIKM 2012: 35-40 - [c7]David Martínez, Andrew MacKinlay, Diego Mollá Aliod, Lawrence Cavedon, Karin Verspoor:
Simple Similarity-based Question Answering Strategies for Biomedical Text. CLEF (Online Working Notes/Labs/Workshop) 2012 - [c6]Andrew MacKinlay, Rebecca Dridan, Diana McCarthy, Timothy Baldwin:
The Effects of Semantic Annotations on Precision Parse Ranking. *SEM@NAACL-HLT 2012: 228-236 - 2011
- [c5]Andrew MacKinlay, Rebecca Dridan, Dan Flickinger, Stephan Oepen, Timothy Baldwin:
Treeblazing: Using External Treebanks to Filter Parse Forests for Parse Selection and Treebanking. IJCNLP 2011: 246-254 - 2009
- [c4]Andrew MacKinlay, David Martínez, Timothy Baldwin:
Biomedical Event Annotation with CRFs and Precision Grammars. BioNLP@HLT-NAACL (Shared Task) 2009: 77-85 - 2006
- [c3]Baden Hughes, Timothy Baldwin, Steven Bird, Jeremy Nicholson, Andrew MacKinlay:
Reconsidering Language Identification for Written Language Resources. LREC 2006: 485-488 - 2005
- [c2]Andrew MacKinlay, Timothy Baldwin:
POS Tagging with a More Informative Tagset. ALTA 2005: 40-48 - [c1]Andrew MacKinlay:
Using Diverse Information Sources to Retrieve Samples of Low Density Languages. ALTA 2005: 64-70
Editorship
- 2019
- [e1]Meladel Mistica, Massimo Piccardi, Andrew MacKinlay:
Proceedings of the The 17th Annual Workshop of the Australasian Language Technology Association, ALTA 2019, Sydney, Australia, December 4-6, 2019. Australasian Language Technology Association 2019 [contents]
Informal and Other Publications
- 2017
- [i2]Quan Tran, Andrew MacKinlay, Antonio Jimeno-Yepes:
Named Entity Recognition with stack residual LSTM and trainable bias decoding. CoRR abs/1706.07598 (2017) - 2009
- [i1]Andrew MacKinlay, Timothy Baldwin:
A Baseline Approach to the RTE5 Search Pilot. TAC 2009
Coauthor Index
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