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ORCIDMohammad-Hadi Foroughmand-Araabi
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Journal Articles
- 2024
[j10]Hamed Vasei, Mohammad-Hadi Foroughmand-Araabi, Amir Daneshgar:
Weighted centroid trees: a general approach to summarize phylogenies in single-labeled tumor mutation tree inference. Bioinform. 40(7) (2024)- 2022
- [j9]Mohammad-Hadi Foroughmand-Araabi
, Sama Goliaei, Alice C. McHardy:
Scelestial: Fast and accurate single-cell lineage tree inference based on a Steiner tree approximation algorithm. PLoS Comput. Biol. 18(8) (2022) - [j8]Morteza Alimi, Amir Daneshgar, Mohammad-Hadi Foroughmand-Araabi:
Mean isoperimetry with control on outliers: Exact and approximation algorithms. Theor. Comput. Sci. 923: 348-365 (2022) - 2021
- [j7]Leila Baghaarabani, Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi, Seyed Peyman Shariatpanahi, Bahram Goliaei:
Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data. BMC Bioinform. 22(1): 416 (2021) - [j6]Florent Becker, Tom Besson, Jérôme Durand-Lose, Aurélien Emmanuel, Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Shahrzad Heydarshahi:
Abstract Geometrical Computation 10: An Intrinsically Universal Family of Signal Machines. ACM Trans. Comput. Theory 13(1): 4:1-4:31 (2021) - 2020
- [j5]Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Bahram Goliaei:
A novel pattern matching algorithm for genomic patterns related to protein motifs. J. Bioinform. Comput. Biol. 18(1): 2050011:1-2050011:19 (2020) - 2018
- [j4]Seyed Amir Malekpour, Parsa Pakzad, Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Ruzbeh Tusserkani, Bahram Goliaei, Mehdi Sadeghi:
Modeling the probability distribution of the bacterial burst size via a game-theoretic approach. J. Bioinform. Comput. Biol. 16(4): 1850012:1-1850012:22 (2018) - 2017
- [j3]Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi:
Computational Complexity of Wavelength-Based Machine with Slightly Interacting Sets. Int. J. Unconv. Comput. 13(2): 117-137 (2017) - 2015
- [j2]Mohammad-Hadi Foroughmand-Araabi, Bahram Goliaei, Kasra Alishahi, Mehdi Sadeghi, Sama Goliaei:
Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach. J. Bioinform. Comput. Biol. 13(2): 1550002:1-1550002:17 (2015) - 2014
- [j1]Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi:
On the complexity of nonuniform wavelength-based machine. Nat. Comput. 13(2): 269-283 (2014)
Conference and Workshop Papers
- 2014
- [c3]Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Bahram Goliaei:
Global Topology of Codon Usage Equality Networks of Escherichia Coli Essential Genes. IWBBIO 2014: 1757-1768 - 2013
- [c2]Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi:
Light Ray Concentration Reduces the Complexity of the Wavelength-Based Machine on PSPACE Languages. UCNC 2013: 90-101 - 2012
- [c1]Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi:
Lower Bounds on the Complexity of the Wavelength-Based Machine. UCNC 2012: 94-105
Informal and Other Publications
- 2023
- [i3]Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Kasra Alishahi:
An Approximation Algorithm for Ancestral Maximum-Likelihood and Phylogeography Inference Problems under Time Reversible Markov Evolutionary Models. CoRR abs/2308.06561 (2023) - 2018
- [i2]Florent Becker, Jérôme Durand-Lose, Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei:
An Intrinsically Universal Family of Signal Machines. CoRR abs/1804.09018 (2018) - [i1]Morteza Alimi, Amir Daneshgar, Mohammad-Hadi Foroughmand-Araabi:
An O(log1.5n log log n) Approximation Algorithm for Mean Isoperimetry and Robust k-means. CoRR abs/1807.05125 (2018)
Coauthor Index
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