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ORCIDVladimir Gligorijevic
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Books and Theses
- 2017
[b1]Vladimir Gligorijevic:
Methods for analysis and integration of heterogeneous network data. Imperial College London, UK, 2017
Journal Articles
- 2023
- [j7]Emmi Jokinen
, Alexandru Dumitrescu, Jani Huuhtanen, Vladimir Gligorijevic, Satu Mustjoki, Richard Bonneau, Markus Heinonen, Harri Lähdesmäki:
TCRconv: predicting recognition between T cell receptors and epitopes using contextualized motifs. Bioinform. 39(1) (2023) - 2021
- [j6]Meet Barot, Vladimir Gligorijevic, Kyunghyun Cho, Richard Bonneau:
NetQuilt: deep multispecies network-based protein function prediction using homology-informed network similarity. Bioinform. 37(16): 2414-2422 (2021) - 2019
- [j5]Vladimir Gligorijevic, Yannis Panagakis, Stefanos Zafeiriou:
Non-Negative Matrix Factorizations for Multiplex Network Analysis. IEEE Trans. Pattern Anal. Mach. Intell. 41(4): 928-940 (2019) - 2018
- [j4]Vladimir Gligorijevic, Meet Barot, Richard Bonneau:
deepNF: deep network fusion for protein function prediction. Bioinform. 34(22): 3873-3881 (2018) - 2016
- [j3]Vladimir Gligorijevic, Noël Malod-Dognin, Natasa Przulj:
Fuse: multiple network alignment via data fusion. Bioinform. 32(8): 1195-1203 (2016) - 2014
- [j2]Vladimir Gligorijevic, Vuk Janjic, Natasa Przulj:
Integration of molecular network data reconstructs Gene Ontology. Bioinform. 30(17): 594-600 (2014) - 2013
- [j1]Bosiljka Tadic, Vladimir Gligorijevic, Marija Mitrovic, Milovan Suvakov:
Co-Evolutionary Mechanisms of Emotional Bursts in Online Social Dynamics and Networks. Entropy 15(12): 5084-5120 (2013)
Conference and Workshop Papers
- 2024
- [c5]Nathan C. Frey, Daniel Berenberg, Karina Zadorozhny, Joseph Kleinhenz, Julien Lafrance-Vanasse, Isidro Hötzel, Yan Wu, Stephen Ra, Richard Bonneau, Kyunghyun Cho, Andreas Loukas, Vladimir Gligorijevic, Saeed Saremi:
Protein Discovery with Discrete Walk-Jump Sampling. ICLR 2024 - 2023
- [c4]Karolis Martinkus, Jan Ludwiczak, Wei-Ching Liang, Julien Lafrance-Vanasse, Isidro Hötzel, Arvind Rajpal, Yan Wu, Kyunghyun Cho, Richard Bonneau, Vladimir Gligorijevic, Andreas Loukas:
AbDiffuser: full-atom generation of in-vitro functioning antibodies. NeurIPS 2023 - 2016
- [c3]Vladimir Gligorijevic, Yannis Panagakis, Stefanos Zafeiriou:
Fusion and community detection in multi-layer graphs. ICPR 2016: 1327-1332 - [c2]Vladimir Gligorijevic, Noël Malod-Dognin, Natasa Przulj:
Patient-Specific Data Fusion for Cancer Stratification and Personalised Treatment. PSB 2016: 321-332 - 2012
- [c1]Vladimir Gligorijevic, Marcin Skowron, Bosiljka Tadic:
Directed Networks of Online Chats: Content-Based Linking and Social Structure. SITIS 2012: 725-730
Informal and Other Publications
- 2024
- [i11]Natasa Tagasovska, Vladimir Gligorijevic, Kyunghyun Cho, Andreas Loukas:
Implicitly Guided Design with PropEn: Match your Data to Follow the Gradient. CoRR abs/2405.18075 (2024) - [i10]Angelica Chen, Samuel Don Stanton, Robert G. Alberstein, Andrew M. Watkins, Richard Bonneau, Vladimir Gligorijevic, Kyunghyun Cho, Nathan C. Frey:
LLMs are Highly-Constrained Biophysical Sequence Optimizers. CoRR abs/2410.22296 (2024) - 2023
- [i9]Nathan C. Frey, Daniel Berenberg, Karina Zadorozhny, Joseph Kleinhenz, Julien Lafrance-Vanasse, Isidro Hötzel, Yan Wu, Stephen Ra, Richard Bonneau, Kyunghyun Cho, Andreas Loukas, Vladimir Gligorijevic, Saeed Saremi:
Protein Discovery with Discrete Walk-Jump Sampling. CoRR abs/2306.12360 (2023) - [i8]Karolis Martinkus, Jan Ludwiczak, Kyunghyun Cho, Wei-Ching Liang, Julien Lafrance-Vanasse, Isidro Hötzel, Arvind Rajpal, Yan Wu, Richard Bonneau, Vladimir Gligorijevic, Andreas Loukas:
AbDiffuser: Full-Atom Generation of In-Vitro Functioning Antibodies. CoRR abs/2308.05027 (2023) - 2022
- [i7]Daniel Berenberg, Jae Hyeon Lee, Simon Kelow, Ji Won Park, Andrew M. Watkins, Vladimir Gligorijevic, Richard Bonneau, Stephen Ra, Kyunghyun Cho:
Multi-segment preserving sampling for deep manifold sampler. CoRR abs/2205.04259 (2022) - [i6]Ji Won Park, Samuel Stanton, Saeed Saremi, Andrew M. Watkins, Henri Dwyer, Vladimir Gligorijevic, Richard Bonneau, Stephen Ra, Kyunghyun Cho:
PropertyDAG: Multi-objective Bayesian optimization of partially ordered, mixed-variable properties for biological sequence design. CoRR abs/2210.04096 (2022) - [i5]Natasa Tagasovska, Nathan C. Frey, Andreas Loukas, Isidro Hötzel, Julien Lafrance-Vanasse, Ryan Lewis Kelly, Yan Wu, Arvind Rajpal, Richard Bonneau, Kyunghyun Cho, Stephen Ra, Vladimir Gligorijevic:
A Pareto-optimal compositional energy-based model for sampling and optimization of protein sequences. CoRR abs/2210.10838 (2022) - 2016
- [i4]Vladimir Gligorijevic, Yannis Panagakis, Stefanos Zafeiriou:
Non-Negative Matrix Factorizations for Multiplex Network Analysis. CoRR abs/1612.00750 (2016) - 2014
- [i3]Bosiljka Tadic, Vladimir Gligorijevic, Marcin Skowron, Milovan Suvakov:
The Dynamics of Emotional Chats with Bots: Experiment and Agent-Based Simulations. CoRR abs/1404.4191 (2014) - 2012
- [i2]Milovan Suvakov, Marija Mitrovic, Vladimir Gligorijevic, Bosiljka Tadic:
How the online social networks are used: Dialogs-based structure of MySpace. CoRR abs/1206.6588 (2012) - [i1]Vladimir Gligorijevic, Marcin Skowron, Bosiljka Tadic:
Structure and stability of online chat networks built on emotion-carrying links. CoRR abs/1209.4760 (2012)
Coauthor Index
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