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ORCIDAalt D. J. van Dijk
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- affiliation: Wageningen University, The Netherlands
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Journal Articles
- 2022
[j16]Aalt D. J. van Dijk, Shin-Han Shiu, Dick de Ridder:
Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics. Frontiers Artif. Intell. 5 (2022)- 2021
- [j15]Janani Durairaj
, Elena Melillo, Harro J. Bouwmeester, Jules Beekwilder, Dick de Ridder, Aalt D. J. van Dijk:
Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases. PLoS Comput. Biol. 17(3) (2021) - 2020
- [j14]Yan Wang, Miguel Correa Marrero, Marnix H. Medema, Aalt D. J. van Dijk:
Coevolution-based prediction of protein-protein interactions in polyketide biosynthetic assembly lines. Bioinform. 36(19): 4846-4853 (2020) - [j13]Janani Durairaj, Mehmet Akdel, Dick de Ridder, Aalt D. J. van Dijk:
Geometricus represents protein structures as shape-mers derived from moment invariants. Bioinform. 36(Supplement-2): i718-i725 (2020) - 2019
- [j12]Miguel Correa Marrero, Richard G. H. Immink, Dick de Ridder, Aalt D. J. van Dijk:
Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis. Bioinform. 35(12): 2036-2042 (2019) - 2016
- [j11]Aalt D. J. van Dijk, Harri Lähdesmäki, Dick de Ridder, Juho Rousu:
Selected proceedings of Machine Learning in Systems Biology: MLSB 2016. BMC Bioinform. 17(S-16): 51-52 (2016) - 2013
- [j10]Yiannis Kourmpetis, Aalt D. J. van Dijk, Cajo J. F. ter Braak:
Gene Ontology consistent protein function prediction: the FALCON algorithm applied to six eukaryotic genomes. Algorithms Mol. Biol. 8: 10 (2013) - [j9]Peter Boyen, Frank Neven, Dries Van Dyck, Felipe L. Valentim, Aalt D. J. van Dijk:
Mining Minimal Motif Pair Sets Maximally Covering Interactions in a Protein-Protein Interaction Network. IEEE ACM Trans. Comput. Biol. Bioinform. 10(1): 73-86 (2013) - 2011
- [j8]Janrdanan Sreekumar, Cajo J. F. ter Braak, Roeland C. H. J. van Ham, Aalt D. J. van Dijk:
Correlated mutations via regularized multinomial regression. BMC Bioinform. 12: 444 (2011) - [j7]Jose M. Muiño, Marlous Hoogstraat, Roeland C. H. J. van Ham, Aalt D. J. van Dijk:
PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments. Nucleic Acids Res. 39(Web-Server-Issue): 524-527 (2011) - [j6]Peter Boyen, Dries Van Dyck, Frank Neven, Roeland C. H. J. van Ham, Aalt D. J. van Dijk:
SLIDER: A Generic Metaheuristic for the Discovery of Correlated Motifs in Protein-Protein Interaction Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 8(5): 1344-1357 (2011) - 2010
- [j5]Simon van Mourik, Aalt D. J. van Dijk, Maarten de Gee, Richard G. H. Immink, Kerstin Kaufmann, Gerco C. Angenent, Roeland C. H. J. van Ham, Jaap Molenaar:
Continuous-time modeling of cell fate determination in Arabidopsis flowers. BMC Syst. Biol. 4: 101 (2010) - [j4]Aalt D. J. van Dijk, Giuseppa Morabito, Martijn Fiers, Roeland C. H. J. van Ham, Gerco C. Angenent, Richard G. H. Immink:
Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction. PLoS Comput. Biol. 6(11) (2010) - 2008
- [j3]Aalt D. J. van Dijk, Cajo J. F. ter Braak, Richard G. H. Immink, Gerco C. Angenent, Roeland C. H. J. van Ham:
Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control. Bioinform. 24(1): 26-33 (2008) - [j2]Aalt D. J. van Dijk, D. Bosch, Cajo J. F. ter Braak, A. R. van der Krol, Roeland C. H. J. van Ham:
Predicting sub-Golgi localization of type II membrane proteins. Bioinform. 24(16): 1779-1786 (2008) - 2006
- [j1]Aalt D. J. van Dijk, Alexandre M. J. J. Bonvin:
Solvated docking: introducing water into the modelling of biomolecular complexes. Bioinform. 22(19): 2340-2347 (2006)
Conference and Workshop Papers
- 2009
- [c1]Peter Boyen, Frank Neven, Dries Van Dyck, Aalt D. J. van Dijk, Roeland C. H. J. van Ham:
SLIDER: Mining Correlated Motifs in Protein-Protein Interaction Networks. ICDM 2009: 716-721
Coauthor Index
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