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ORCIDHarel Weinstein
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2020 – today
- 2023
[c8]Harshita Sahni, Hector Carrillo-Cabada, Ekaterina D. Kots, Silvina Caíno-Lores, Jack Marquez
, Ewa Deelman, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada:
Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations. e-Science 2023: 1-10- [c7]Silvina Caíno-Lores, Michel A. Cuendet, Jack Marquez, Ekaterina D. Kots, Trilce Estrada, Ewa Deelman, Harel Weinstein, Michela Taufer:
Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and Annotation of Collective Variables. PASC 2023: 21:1-21:11 - 2021
- [j15]Tu Mai Anh Do, Loïc Pottier, Silvina Caíno-Lores, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman:
A lightweight method for evaluating in situ workflow efficiency. J. Comput. Sci. 48: 101259 (2021) - [j14]Hector Carrillo-Cabada, Jeremy Benson, Asghar M. Razavi, Brianna Mulligan, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada:
A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1336-1349 (2021) - 2020
- [j13]George Khelashvili, Xiaolu Cheng, Maria E. Falzone, Milka Doktorova, Alessio Accardi, Harel Weinstein:
Membrane lipids are both the substrates and a mechanistically responsive environment of TMEM16 scramblase proteins. J. Comput. Chem. 41(6): 538-551 (2020) - [c6]Tu Mai Anh Do, Loïc Pottier, Stephen Thomas, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman:
A Novel Metric to Evaluate In Situ Workflows. ICCS (1) 2020: 538-553
2010 – 2019
- 2019
- [c5]Michela Taufer, Ewa Deelman, Stephen Thomas, Michael R. Wyatt II, Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Harel Weinstein, Michel A. Cuendet, Trilce Estrada:
Characterizing In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-Generation Supercomputers. eScience 2019: 188-198 - 2018
- [c4]Trilce Estrada, Jeremy Benson, Hector Carrillo-Cabada, Asghar M. Razavi, Michel A. Cuendet, Harel Weinstein, Ewa Deelman, Michela Taufer:
Graphic Encoding of Macromolecules for Efficient High-Throughput Analysis. BCB 2018: 315-324 - 2015
- [j12]Michael V. LeVine, Harel Weinstein:
AIM for Allostery: Using the Ising Model to Understand Information Processing and Transmission in Allosteric Biomolecular Systems. Entropy 17(5): 2895-2918 (2015) - 2014
- [j11]Michael V. LeVine, Harel Weinstein:
NbIT - A New Information Theory-Based Analysis of Allosteric Mechanisms Reveals Residues that Underlie Function in the Leucine Transporter LeuT. PLoS Comput. Biol. 10(5) (2014) - [c3]Michael V. LeVine, Jose Manuel Perez-Aguilar, Harel Weinstein:
N-body Information Theory (NbIT) Analysis of Rigid-Body Dynamics in Intracellular Loop 2 of the 5-HT2A Receptor. IWBBIO 2014: 1190-1201 - 2012
- [j10]Jufang Shan, George Khelashvili, Sayan Mondal, Ernest L. Mehler, Harel Weinstein:
Ligand-Dependent Conformations and Dynamics of the Serotonin 5-HT2A Receptor Determine Its Activation and Membrane-Driven Oligomerization Properties. PLoS Comput. Biol. 8(4) (2012) - 2010
- [c2]Zeynep H. Gümüs, Fernando Siso-Nadal, Ada Gjrezi, Paul McDonagh, Iya Khalil, Paraskevi Giannakakou, Harel Weinstein:
Quantification and Analysis of Combination Drug Synergy in High-Throughput Transcriptome Studies. BIBE 2010: 238-243 - [c1]Lei Shi, Marko Srdanovic, Thijs Beuming, Lucy Skrabanek, Jonathan A. Javitch, Harel Weinstein:
TRAC: A Platform for Structure-Function Studies of NSS-Proteins Integrates Information from Bioinformatics and Biomedical Literature. BIBE 2010: 267-272
2000 – 2009
- 2007
- [j9]Masha Y. Niv, Lucy Skrabanek, Marta Filizola, Harel Weinstein:
Modeling activated states of GPCRs: the rhodopsin template. J. Comput. Aided Mol. Des. 21(7): 419 (2007) - 2006
- [j8]Marta Filizola, Simon X. Wang, Harel Weinstein:
Dynamic models of G-protein coupled receptor dimers: indications of asymmetry in the rhodopsin dimer from molecular dynamics simulations in a POPC bilayer. J. Comput. Aided Mol. Des. 20(7-8): 405-416 (2006) - [j7]Masha Y. Niv, Lucy Skrabanek, Marta Filizola, Harel Weinstein:
Modeling activated states of GPCRs: the rhodopsin template. J. Comput. Aided Mol. Des. 20(7-8): 437-448 (2006) - 2005
- [j6]Thijs Beuming, Lucy Skrabanek, Masha Y. Niv, Piali Mukherjee, Harel Weinstein:
PDZBase: a protein?Cprotein interaction database for PDZ-domains. Bioinform. 21(6): 827-828 (2005) - 2004
- [j5]Thijs Beuming, Harel Weinstein:
A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins. Bioinform. 20(12): 1822-1835 (2004) - 2003
- [j4]Fabien Campagne, Emmanuel Bettler, Gert Vriend, Harel Weinstein:
Batch mode generation of residue-based diagrams of proteins. Bioinform. 19(14): 1854-1855 (2003) - [j3]Lucy Skrabanek, Fabien Campagne, Harel Weinstein:
Building protein diagrams on the web with the residue-based diagram editor RbDe. Nucleic Acids Res. 31(13): 3856-3858 (2003) - 2002
- [j2]Ernest L. Mehler, Xavier Periole, S. A. Hassan, Harel Weinstein:
Key issues in the computational simulation of GPCR function: representation of loop domains. J. Comput. Aided Mol. Des. 16(11): 841-853 (2002)
1990 – 1999
- 1997
- [j1]Arnaud J. A. Soirat, Chung F. Wong, Roman Osman, Harel Weinstein:
Brownian dynamics simulations of the reactions of hydrated electrons with components of DNAs and a DNA double-helix. J. Comput. Chem. 18(7): 888-901 (1997)
Coauthor Index
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