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Journal Articles
- 2021
[j10]Tao Hu, Juan Li
, Hong Zhou, Cixiu Li, Edward C. Holmes, Weifeng Shi:
Bioinformatics resources for SARS-CoV-2 discovery and surveillance. Briefings Bioinform. 22(2): 631-641 (2021)- [j9]Jan P. Buchmann, Edward C. Holmes:
Collecting and managing taxonomic data with NCBI-taxonomist. Bioinform. 36(22-23): 5548-5550 (2021) - 2019
- [j8]Jan P. Buchmann, Edward C. Holmes:
Entrezpy: a Python library to dynamically interact with the NCBI Entrez databases. Bioinform. 35(21): 4511-4514 (2019) - 2017
- [j7]Katharine L. M. Adamyk, Edward C. Holmes, G. R. Mayfield, Dennis J. Moritz, Marion Scheepers, Bridget Eileen Tenner, Helen C. Wauck:
Sorting permutations: Games, genomes, and cycles. Discret. Math. Algorithms Appl. 9(5): 1750063:1-1750063:31 (2017) - [j6]Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D'Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. G. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo F. Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut:
Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nat. 544(7650): 309-315 (2017) - [j5]Nuno R. Faria, Joshua Quick, I. M. Claro, Julien Thézé, J. G. de Jesus, Marta Giovanetti, Moritz U. G. Kraemer, S. C. Hill, Allison Black, A. C. Da Costa, L. C. Franco, S. P. Silva, Chieh-Hsi Wu, Jayna Raghwani, Simon Cauchemez, Louis du Plessis, M. P. Verotti, W. K. de Oliveira, E. H. Carmo, G. E. Coelho, A. C. F. S. Santelli, L. C. Vinhal, C. M. Henriques, J. T. Simpson, Matthew Loose, Kristian G. Andersen, N. D. Grubaugh, S. Somasekar, C. Y. Chiu, J. E. Muñoz-Medina, C. R. Gonzalez-Bonilla, Carolina Fócil Arias, L. L. Lewis-Ximenez, S. A. Baylis, A. O. Chieppe, S. F. Aguiar, C. A. Fernandes, P. S. Lemos, B. L. S. Nascimento, H. A. O. Monteiro, I. C. Siqueira, M. G. de Queiroz, T. R. de Souza, J. F. Bezerra, M. R. Lemos, G. F. Pereira, D. Loudal, L. C. Moura, R. Dhalia, R. F. França, T. Magalhães, E. T. Marques Jr, Thomas Jaenisch, Gabriel da Luz Wallau, M. C. de Lima, V. Nascimento, E. M. de Cerqueira, M. M. de Lima, D. L. Mascarenhas, J. P. Moura Neto, A. S. Levin, T. R. Tozetto-Mendoza, S. N. Fonseca, M. C. Mendes-Correa, F. P. Milagres, Aluisio Segurado, Edward C. Holmes, Andrew Rambaut, Trevor Bedford, M. R. T. Nunes, Ester C. Sabino, Luis Carlos Alcantara, Nicholas J. Loman, Oliver G. Pybus:
Establishment and cryptic transmission of Zika virus in Brazil and the Americas. Nat. 546(7658): 406-410 (2017) - 2016
- [j4]Sebastián Duchêne, Jemma L. Geoghegan, Edward C. Holmes, Simon Y. W. Ho:
Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods. Bioinform. 32(22): 3375-3379 (2016) - 2009
- [j3]Edward C. Holmes, Bryan T. Grenfell:
Discovering the Phylodynamics of RNA Viruses. PLoS Comput. Biol. 5(10) (2009) - 1998
- [j2]V. Proutski, Edward C. Holmes:
SWAN: sliding window analysis of nucleotide sequence variability. Bioinform. 14(5): 467-468 (1998) - 1996
- [j1]V. Proutski, Edward C. Holmes:
Primer Master: a new program for the design and analysis of PCR primers. Comput. Appl. Biosci. 12(3): 253-255 (1996)
Coauthor Index
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