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Journal Articles
- 2013
[j18]Wilco W. M. Fleuren, Erik J. M. Toonen, Stefan Verhoeven
, Raoul Frijters, Tim Hulsen, Ton Rullmann, René C. van Schaik, Jacob de Vlieg, Wynand Alkema:
Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining. BioData Min. 6: 2 (2013)- 2012
- [j17]Gijs Schaftenaar, Jacob de Vlieg:
Quantum mechanical polar surface area. J. Comput. Aided Mol. Des. 26(3): 311-318 (2012) - [j16]Markus Wagener, Jacob de Vlieg, Sander B. Nabuurs:
Flexible protein-ligand docking using the Fleksy protocol. J. Comput. Chem. 33(12): 1215-1217 (2012) - [j15]Eric J. Baede, Ernest den Bekker, Jan-Willem Boiten, Deborah Cronin, Rob van Gammeren, Jacob de Vlieg:
Integrated Project Views: Decision Support Platform for Drug Discovery Project Teams. J. Chem. Inf. Model. 52(6): 1438-1449 (2012) - [j14]Marijn P. A. Sanders, Arménio Jorge Moura Barbosa, Barbara Zarzycka, Gerry A. F. Nicolaes, Jan P. G. Klomp, Jacob de Vlieg, Alberto Del Rio:
Comparative Analysis of Pharmacophore Screening Tools. J. Chem. Inf. Model. 52(6): 1607-1620 (2012) - [j13]David J. Wood, Jacob de Vlieg, Markus Wagener, Tina Ritschel:
Pharmacophore Fingerprint-Based Approach to Binding Site Subpocket Similarity and Its Application to Bioisostere Replacement. J. Chem. Inf. Model. 52(8): 2031-2043 (2012) - 2011
- [j12]Marijn P. A. Sanders, Wilco W. M. Fleuren, Stefan Verhoeven, Sven van den Beld, Wynand Alkema, Jacob de Vlieg, Jan P. G. Klomp:
ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs. BMC Bioinform. 12: 332 (2011) - [j11]Tina Ritschel, David J. Wood, Jacob de Vlieg, Markus Wagener:
Extraction of useful bioisostere replacments from the PDB. J. Cheminformatics 3(S-1): 37 (2011) - [j10]Marijn P. A. Sanders, Stefan Verhoeven, Chris de Graaf, Luc Roumen, Bas Vroling, Sander B. Nabuurs, Jacob de Vlieg, Jan P. G. Klomp:
Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs. J. Chem. Inf. Model. 51(9): 2277-2292 (2011) - [j9]Bas Vroling, Marijn P. A. Sanders, Coos Baakman, Annika Borrmann, Stefan Verhoeven, Jan P. G. Klomp, Laerte Oliveira, Jacob de Vlieg, Gert Vriend:
GPCRDB: information system for G protein-coupled receptors. Nucleic Acids Res. 39(Database-Issue): 309-319 (2011) - [j8]Wilco W. M. Fleuren, Stefan Verhoeven, Raoul Frijters, Bart Heupers, Jan Polman, René C. van Schaik, Jacob de Vlieg, Wynand Alkema:
CoPub update: CoPub 5.0 a text mining system to answer biological questions. Nucleic Acids Res. 39(Web-Server-Issue): 450-454 (2011) - 2010
- [j7]Jorn R. de Haan, Ester Piek, René C. van Schaik, Jacob de Vlieg, Susanne Bauerschmidt, Lutgarde M. C. Buydens, Ron Wehrens:
Integrating gene expression and GO classification for PCA by preclustering. BMC Bioinform. 11: 158 (2010) - [j6]Markus Wagener, Sander B. Nabuurs, Jacob de Vlieg:
Fleksy: a flexible approach to induced fit docking. J. Cheminformatics 2(S-1): 24 (2010) - [j5]Raoul Frijters, Marianne van Vugt, Ruben Smeets, René C. van Schaik, Jacob de Vlieg, Wynand Alkema:
Literature Mining for the Discovery of Hidden Connections between Drugs, Genes and Diseases. PLoS Comput. Biol. 6(9) (2010) - 2009
- [j4]Tim Hulsen, Peter M. A. Groenen, Jacob de Vlieg, Wynand Alkema:
PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood. Nucleic Acids Res. 37(Database-Issue): 731-737 (2009) - 2008
- [j3]Raoul Frijters, Bart Heupers, Pieter van Beek, Maurice Bouwhuis, René C. van Schaik, Jacob de Vlieg, Jan Polman, Wynand Alkema:
CoPub: a literature-based keyword enrichment tool for microarray data analysis. Nucleic Acids Res. 36(Web-Server-Issue): 406-410 (2008) - 2006
- [j2]Tim Hulsen, Jacob de Vlieg, Peter M. A. Groenen:
PhyloPat: phylogenetic pattern analysis of eukaryotic genes. BMC Bioinform. 7: 398 (2006) - [j1]Tim Hulsen, Jacob de Vlieg, Jack A. M. Leunissen, Peter M. A. Groenen:
Testing statistical significance scores of sequence comparison methods with structure similarity. BMC Bioinform. 7: 444 (2006)
Coauthor Index
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