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2020 – today
- 2023
[j18]Jimin Pei
, Qian Cong:
AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold. Database J. Biol. Databases Curation 2023 (2023)- 2022
- [j17]Kirill E. Medvedev, Jimin Pei, Nick V. Grishin:
DisEnrich: database of enriched regions in human dark proteome. Bioinform. 38(7): 1870-1876 (2022) - [j16]Jimin Pei, Jing Zhang, Qian Cong:
Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling. Bioinform. 38(18): 4301-4311 (2022) - 2020
- [j15]Yoonji Lee, Jordan M. Baumhardt, Jimin Pei, Yuh Min Chook, Nick V. Grishin:
pCRM1exportome: database of predicted CRM1-dependent Nuclear Export Signal (NES) motifs in cancer-related genes. Bioinform. 36(3): 961-963 (2020) - [j14]Jimin Pei, Lisa N. Kinch, Zbyszek Otwinowski, Nick V. Grishin:
Mutation severity spectrum of rare alleles in the human genome is predictive of disease type. PLoS Comput. Biol. 16(5) (2020)
2010 – 2019
- 2018
- [j13]Yuxing Liao, R. Dustin Schaeffer, Jimin Pei, Nick V. Grishin:
A sequence family database built on ECOD structural domains. Bioinform. 34(17): 2997-3003 (2018) - 2015
- [j12]Darui Xu, Kara Marquis, Jimin Pei, Szu-Chin Fu, Tolga Cagatay, Nick V. Grishin, Yuh Min Chook:
LocNES: a computational tool for locating classical NESs in CRM1 cargo proteins. Bioinform. 31(9): 1357-1365 (2015) - [j11]Jing Tong, Jimin Pei, Nick V. Grishin:
SFESA: a web server for pairwise alignment refinement by secondary structure shifts. BMC Bioinform. 16: 282:1-282:7 (2015) - 2014
- [j10]Hua Cheng, R. Dustin Schaeffer, Yuxing Liao, Lisa N. Kinch, Jimin Pei, Shuoyong Shi, Bong-Hyun Kim, Nick V. Grishin:
ECOD: An Evolutionary Classification of Protein Domains. PLoS Comput. Biol. 10(12) (2014) - 2013
- [j9]Ivan K. Huang, Jimin Pei, Nick V. Grishin:
Defining and predicting structurally conserved regions in protein superfamilies. Bioinform. 29(2): 175-181 (2013) - 2011
- [j8]Qian Cong, Lisa N. Kinch, Jimin Pei, Shuoyong Shi, Vyacheslav N. Grishin, Wenlin Li, Nick V. Grishin:
An automatic method for CASP9 free modeling structure prediction assessment. Bioinform. 27(24): 3371-3378 (2011)
2000 – 2009
- 2009
- [j7]Shuoyong Shi, Jimin Pei, Ruslan Sadreyev, Lisa N. Kinch, Indraneel Majumdar, Jing Tong, Hua Cheng, Bong-Hyun Kim, Nick V. Grishin:
Analysis of CASP8 targets, predictions and assessment methods. Database J. Biol. Databases Curation 2009 (2009) - 2008
- [j6]Jimin Pei, Ming Tang, Nick V. Grishin:
PROMALS3D web server for accurate multiple protein sequence and structure alignments. Nucleic Acids Res. 36(Web-Server-Issue): 30-34 (2008) - 2007
- [j5]Jimin Pei, Nick V. Grishin:
PROMALS: towards accurate multiple sequence alignments of distantly related proteins. Bioinform. 23(7): 802-808 (2007) - [j4]Jimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grishin:
PROMALS web server for accurate multiple protein sequence alignments. Nucleic Acids Res. 35(Web-Server-Issue): 649-652 (2007) - 2006
- [j3]Jimin Pei, Wei Cai, Lisa N. Kinch, Nick V. Grishin:
Prediction of functional specificity determinants from protein sequences using log-likelihood ratios. Bioinform. 22(2): 164-171 (2006) - 2003
- [j2]Jimin Pei, Ruslan Sadreyev, Nick V. Grishin:
PCMA: fast and accurate multiple sequence alignment based on profile consistency. Bioinform. 19(3): 427-428 (2003) - 2001
- [j1]Jimin Pei, Nick V. Grishin:
AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinform. 17(8): 700-712 (2001)
Coauthor Index
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