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2020 – today
- 2024
[j19]Elizabeth S. Allman
, Colby Long, John A. Rhodes:
Phylogenomic Models from Tree Symmetries. SIAM J. Appl. Algebra Geom. 8(1): 114-137 (2024)- 2023
- [j18]Elizabeth Gross, John A. Rhodes:
Inferring Phylogenetic Networks Using Algebraic Geometry. XRDS 30(2): 24-27 (2023) - [j17]Dakota Dragomir, Elizabeth S. Allman, John A. Rhodes:
Parameter Identifiability of a Multitype Pure-Birth Model of Speciation. J. Comput. Biol. 30(3): 277-292 (2023) - [j16]Elizabeth S. Allman, Hector Baños, John A. Rhodes:
Testing Multispecies Coalescent Simulators Using Summary Statistics. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1613-1618 (2023) - 2021
- [j15]John A. Rhodes, Hector Baños, Jonathan D. Mitchell, Elizabeth S. Allman:
MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R. Bioinform. 37(12): 1766-1768 (2021) - [j14]Samaneh Yourdkhani, Elizabeth S. Allman, John A. Rhodes:
Parameter Identifiability for a Profile Mixture Model of Protein Evolution. J. Comput. Biol. 28(6): 570-586 (2021) - 2020
- [j13]John A. Rhodes:
Topological Metrizations of Trees, and New Quartet Methods of Tree Inference. IEEE ACM Trans. Comput. Biol. Bioinform. 17(6): 2107-2118 (2020)
2010 – 2019
- 2019
- [j12]Elizabeth S. Allman, Hector Baños, John A. Rhodes:
NANUQ: a method for inferring species networks from gene trees under the coalescent model. Algorithms Mol. Biol. 14(1): 24 (2019) - [j11]Elizabeth S. Allman, Colby Long, John A. Rhodes:
Species Tree Inference from Genomic Sequences Using the Log-Det Distance. SIAM J. Appl. Algebra Geom. 3(1): 107-127 (2019) - 2018
- [j10]Elizabeth S. Allman, James H. Degnan, John A. Rhodes:
Species Tree Inference from Gene Splits by Unrooted STAR Methods. IEEE ACM Trans. Comput. Biol. Bioinform. 15(1): 337-342 (2018) - 2017
- [j9]Elizabeth S. Allman, John A. Rhodes, Seth Sullivant:
Statistically Consistent k-mer Methods for Phylogenetic Tree Reconstruction. J. Comput. Biol. 24(2): 153-171 (2017) - 2014
- [j8]Elizabeth S. Allman, John A. Rhodes, Amelia Taylor:
A Semialgebraic Description of the General Markov Model on Phylogenetic Trees. SIAM J. Discret. Math. 28(2): 736-755 (2014) - 2013
- [j7]Elizabeth S. Allman, James H. Degnan, John A. Rhodes:
Species Tree Inference by the STAR Method and Its Generalizations. J. Comput. Biol. 20(1): 50-61 (2013) - [j6]Elizabeth S. Allman, Peter D. Jarvis, John A. Rhodes, Jeremy G. Sumner:
Tensor Rank, Invariants, Inequalities, and Applications. SIAM J. Matrix Anal. Appl. 34(3): 1014-1045 (2013) - 2011
- [j5]Elizabeth S. Allman, Sonja Petrovic, John A. Rhodes, Seth Sullivant:
Identifiability of Two-Tree Mixtures for Group-Based Models. IEEE ACM Trans. Comput. Biol. Bioinform. 8(3): 710-722 (2011)
2000 – 2009
- 2009
- [j4]Elizabeth S. Allman, John A. Rhodes:
The Identifiability of Covarion Models in Phylogenetics. IEEE ACM Trans. Comput. Biol. Bioinform. 6(1): 76-88 (2009) - 2008
- [j3]Elizabeth S. Allman, John A. Rhodes:
Phylogenetic ideals and varieties for the general Markov model. Adv. Appl. Math. 40(2): 127-148 (2008) - 2006
- [j2]Elizabeth S. Allman, John A. Rhodes:
The Identifiability of Tree Topology for Phylogenetic Models, Including Covarion and Mixture Models. J. Comput. Biol. 13(5): 1101-1113 (2006) - [j1]Elizabeth S. Allman, John A. Rhodes:
Phylogenetic invariants for stationary base composition. J. Symb. Comput. 41(2): 138-150 (2006)
Coauthor Index
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