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Journal Articles
- 2024
[j14]Vincent Y. Pappalardo, Leyla Azarang, Egija Zaura
, Bernd W. Brandt, Renée X. de Menezes:
A new approach to describe the taxonomic structure of microbiome and its application to assess the relationship between microbial niches. BMC Bioinform. 25(1): 58 (2024)- 2023
- [j13]Renaud L. M. Tissier, Janne J. M. van Schie, Rob M. F. Wolthuis, Job de Lange, Renée X. de Menezes:
ShrinkCRISPR: a flexible method for differential fitness analysis of CRISPR-Cas9 screen data. BMC Bioinform. 24(1): 36 (2023) - 2022
- [j12]Sofie Bosch, Renée X. de Menezes, Suzanne Pees, Dion S. J. Wintjens, Margien Seinen, Gerd Bouma, Johan Kuyvenhoven, Pieter C. F. Stokkers, Tim G. J. de Meij, Nanne K. H. de Boer:
Electronic Nose Sensor Drift Affects Diagnostic Reliability and Accuracy of Disease-Specific Algorithms. Sensors 22(23): 9246 (2022) - 2020
- [j11]Armin Rauschenberger, Iuliana Ciocanea-Teodorescu, Marianne A. Jonker, Renée X. de Menezes, Mark A. van de Wiel:
Sparse classification with paired covariates. Adv. Data Anal. Classif. 14(3): 571-588 (2020) - 2018
- [j10]Costa Bachas, Jasmina Hodzic, Johannes C. van der Mijn, Chantal Stoepker, Henk M. W. Verheul, Rob M. F. Wolthuis, Emanuela Felley-Bosco, Wessel N. van Wieringen, Victor W. van Beusechem, Ruud H. Brakenhoff, Renée X. de Menezes:
Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection. BMC Bioinform. 19(1): 301:1-301:12 (2018) - 2016
- [j9]Renée X. de Menezes, Leila Mohammadi, Jelle J. Goeman, Judith M. Boer:
Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack. BMC Bioinform. 17: 77 (2016) - [j8]Armin Rauschenberger, Marianne A. Jonker, Mark A. van de Wiel, Renée X. de Menezes:
Testing for association between RNA-Seq and high-dimensional data. BMC Bioinform. 17: 118 (2016) - 2014
- [j7]Nimisha Chaturvedi, Jelle J. Goeman, Judith M. Boer, Wessel N. van Wieringen, Renée X. de Menezes:
A test for comparing two groups of samples when analyzing multiple omics profiles. BMC Bioinform. 15: 236 (2014) - 2012
- [j6]Wessel N. van Wieringen, Kristian Unger, Gwenaël G. R. Leday, Oscar Krijgsman, Renée X. de Menezes, Bauke Ylstra, Mark A. van de Wiel:
Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses. BMC Bioinform. 13: 80 (2012) - 2011
- [j5]Peter A. C. 't Hoen, Michael Hirsch, Emile J. de Meijer, Renée X. de Menezes, Gert-Jan B. van Ommen, Johan T. den Dunnen:
mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance. Nucleic Acids Res. 39(2): 556-566 (2011) - 2010
- [j4]Maarten van Iterson, Judith M. Boer, Renée X. de Menezes:
Filtering, FDR and power. BMC Bioinform. 11: 450 (2010) - 2009
- [j3]Renée X. de Menezes, Marten Boetzer, Melle Sieswerda, Gert-Jan B. van Ommen, Judith M. Boer:
Integrated analysis of DNA copy number and gene expression microarray data using gene sets. BMC Bioinform. 10 (2009) - 2005
- [j2]Paul H. C. Eilers, Renée X. de Menezes:
Quantile smoothing of array CGH data. Bioinform. 21(7): 1146-1153 (2005) - [j1]J. Peter Svensson, Renée X. de Menezes, Ingela Turesson, Micheline Giphart-Gassler, Harry Vrieling:
Dissecting systems-wide data using mixture models: application to identify affected cellular processes. BMC Bioinform. 6: 177 (2005)
Conference and Workshop Papers
- 2005
- [c1]Jeannette M. de Graaf, Renée X. de Menezes, Judith M. Boer, Walter A. Kosters:
Frequent Itemsets for Genomic Profiling. CompLife 2005: 104-116
Coauthor Index
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