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ORCIDCongting Ye
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- affiliation: Xiamen University, Fujian, China
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Journal Articles
- 2023
[j11]Wenbin Ye
, Qiwei Lian, Congting Ye, Xiaohui Wu:
A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq. Genom. Proteom. Bioinform. 21(1): 67-83 (2023)- 2021
- [j10]Xiaohui Wu, Tao Liu, Congting Ye, Wenbin Ye, Guoli Ji:
scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data. Briefings Bioinform. 22(4) (2021) - [j9]Congting Ye, Danhui Zhao, Wenbin Ye, Xiaohui Wu, Guoli Ji, Qingshun Quinn Li, Juncheng Lin:
QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering. Briefings Bioinform. 22(6) (2021) - [j8]Wenbin Ye, Tao Liu, Hongjuan Fu, Congting Ye, Guoli Ji, Xiaohui Wu:
movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples. Bioinform. 37(16): 2470-2472 (2021) - 2020
- [j7]Moliang Chen, Guoli Ji, Hongjuan Fu, Qianmin Lin, Congting Ye, Wenbin Ye, Yaru Su, Xiaohui Wu:
A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data. Briefings Bioinform. 21(4): 1261-1276 (2020) - [j6]Pengchao Ye, Wenbin Ye, Congting Ye, Shuchao Li, Lishan Ye, Guoli Ji, Xiaohui Wu:
scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size. Bioinform. 36(3): 789-797 (2020) - [j5]Congting Ye, Qian Zhou, Xiaohui Wu, Chen Yu, Guoli Ji, Daniel R. Saban, Qingshun Quinn Li:
scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data. Bioinform. 36(4): 1262-1264 (2020) - 2018
- [j4]Jinting Guan, Moliang Chen, Congting Ye, James J. Cai, Guoli Ji:
AEGS: identifying aberrantly expressed gene sets for differential variability analysis. Bioinform. 34(5): 881-883 (2018) - [j3]Congting Ye, Yuqi Long, Guoli Ji, Qingshun Quinn Li, Xiaohui Wu:
APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data. Bioinform. 34(11): 1841-1849 (2018) - [j2]Guoli Ji, Moliang Chen, Wenbin Ye, Sheng Zhu, Congting Ye, Yaru Su, Haonan Peng, Xiaohui Wu:
TSAPA: identification of tissue-specific alternative polyadenylation sites in plants. Bioinform. 34(12): 2123-2125 (2018) - 2017
- [j1]Guoli Ji, Qianmin Lin, Yuqi Long, Congting Ye, Wenbin Ye, Xiaohui Wu:
PAcluster: Clustering polyadenylation site data using canonical correlation analysis. J. Bioinform. Comput. Biol. 15(5): 1750018:1-1750018:19 (2017)
Conference and Workshop Papers
- 2009
- [c1]Guoli Ji, Congting Ye, Zijiang Yang, Zhenya Guo:
A Novel Method for Progressive Multiple Sequence Alignment Based on Lempel-Ziv. ICONIP (1) 2009: 151-158
Coauthor Index
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