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Pavlo Lutsik
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2020 – today
- 2024
- [j8]Yunhee Jeong, Jonathan Ronen, Wolfgang Kopp, Pavlo Lutsik, Altuna Akalin:
scMaui: a widely applicable deep learning framework for single-cell multiomics integration in the presence of batch effects and missing data. BMC Bioinform. 25(1): 257 (2024) - 2022
- [j7]Yunhee Jeong, Lisa Barros de Andrade e Sousa, Dominik Thalmeier, Reka Toth, Marlene Ganslmeier, Kersten Breuer, Christoph Plass, Pavlo Lutsik:
Systematic evaluation of cell-type deconvolution pipelines for sequencing-based bulk DNA methylomes. Briefings Bioinform. 23(4) (2022) - 2021
- [j6]Anand Mayakonda, Maximilian Schönung, Joschka Hey, Rajbir Nath Batra, Clarissa Feuerstein-Akgoz, Kristin Köhler, Daniel B. Lipka, Rocio Sotillo, Christoph Plass, Pavlo Lutsik, Reka Toth:
Methrix: an R/Bioconductor package for systematic aggregation and analysis of bisulfite sequencing data. Bioinform. 36(22-23): 5524-5525 (2021) - 2020
- [j5]Clémentine Decamps, Florian Privé, Raphael Bacher, Daniel Jost, Arthur Waguet, Eugene Andres Houseman, Eugene Lurie, Pavlo Lutsik, Aleksandar Milosavljevic, Michael Scherer, Michael G. B. Blum, Magali Richard:
Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software. BMC Bioinform. 21(1): 16 (2020)
2010 – 2019
- 2015
- [j4]Matthias Döring, Gilles Gasparoni, Jasmin Gries, Karl Nordström, Pavlo Lutsik, Jörn Walter, Nico Pfeifer:
Identification and analysis of methylation call differences between bisulfite microarray and bisulfite sequencing data with statistical learning techniques. BMC Bioinform. 16(S-3): A7 (2015) - 2014
- [j3]Junfang Chen, Pavlo Lutsik, Ruslan Akulenko, Jörn Walter, Volkhard Helms:
AKSmooth: Enhancing low-coverage bisulfite sequencing data via kernel-based smoothing. J. Bioinform. Comput. Biol. 12(6) (2014) - [j2]Daniel Becker, Pavlo Lutsik, Peter Ebert, Christoph Bock, Thomas Lengauer, Jörn Walter:
BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives. Nucleic Acids Res. 42(Webserver-Issue): 501-507 (2014) - [i1]Martin Slawski, Matthias Hein, Pavlo Lutsik:
Matrix factorization with Binary Components. CoRR abs/1401.6024 (2014) - 2013
- [c1]Martin Slawski, Matthias Hein, Pavlo Lutsik:
Matrix factorization with binary components. NIPS 2013: 3210-3218 - 2011
- [j1]Pavlo Lutsik, Lars Feuerbach, Julia Arand, Thomas Lengauer, Jörn Walter, Christoph Bock:
BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing. Nucleic Acids Res. 39(Web-Server-Issue): 551-556 (2011)
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