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ORCIDShuichi Onami
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2020 – today
- 2024
[j15]Yuki Yamagata
, Tatsuya Kushida, Shuichi Onami, Hiroshi Masuya:
Homeostasis imbalance process ontology: a study on COVID-19 infectious processes. BMC Medical Informatics Decis. Mak. 23-S(4): 301 (2024)- 2023
- [j14]Yusuke Azuma, Hatsumi Okada, Shuichi Onami:
Systematic analysis of cell morphodynamics in C. elegans early embryogenesis. Frontiers Bioinform. 3 (2023) - 2022
- [j13]Soya Shinkai, Hiroya Itoga, Koji Kyoda, Shuichi Onami:
PHi-C2: interpreting Hi-C data as the dynamic 3D genome state. Bioinform. 38(21): 4984-4986 (2022) - [c6]Eisuke Ito, Takaya Ueda, Ryo Takano, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa:
Phenotype Anomaly Detection for Biological Dynamics Data Using a Deep Generative Model. ICANN (2) 2022: 432-444 - [c5]Yuki Yamagata, Shuichi Onami, Hiroshi Masuya:
Knowledge Systematization for Cellular Senescence Processes by Homeostasis Imbalance Process Ontology. ICBO 2022: 1 - 2021
- [j12]Momoko Imakubo, Jun Takayama, Hatsumi Okada, Shuichi Onami:
Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes. BMC Bioinform. 22(1): 73 (2021)
2010 – 2019
- 2019
- [c4]Josh Moore, Norio Kobayashi, Susanne Kunis, Shuichi Onami, Jason R. Swedlow:
On Bringing Bioimaging Data into the Open (World). SWAT4HCLS 2019: 44-53 - [c3]Norio Kobayashi, Josh Moore, Shuichi Onami, Jason R. Swedlow:
OME Core Ontology: An OWL-based Life Science Imaging Data Model. SWAT4HCLS 2019: 149-150 - 2018
- [c2]Yosuke Onoue, Koji Kyoda, Miki Kioka, Kazutaka Baba, Shuichi Onami, Koji Koyamada:
Development of an Integrated Visualization System for Phenotypic Character Networks. PacificVis 2018: 21-25 - 2017
- [j11]Yusuke Azuma, Shuichi Onami:
Biologically constrained optimization based cell membrane segmentation in C. elegans embryos. BMC Bioinform. 18(1): 307 (2017) - [j10]Sihai Yang, Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen:
Phenotype Analysis Method for Identification of Gene Functions Involved in Asymmetric Division of Caenorhabditis elegans. J. Comput. Biol. 24(5): 436-446 (2017) - 2016
- [j9]Yukako Tohsato, Kenneth H. L. Ho, Koji Kyoda, Shuichi Onami:
SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena. Bioinform. 32(22): 3471-3479 (2016) - [j8]Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen:
Nuclear detection in 4D microscope images of a developing embryo using an enhanced probability map of top-ranked intensity-ordered descriptors. IPSJ Trans. Comput. Vis. Appl. 8: 8 (2016) - 2015
- [j7]Koji Kyoda, Yukako Tohsato, Kenneth H. L. Ho, Shuichi Onami:
Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data. Bioinform. 31(7): 1044-1052 (2015) - [c1]Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen:
Nuclear detection in 4D microscope images using enhanced probability map of top-ranked intensity-ordered descriptors. ACPR 2015: 554-558 - 2013
- [j6]Yusuke Azuma, Shuichi Onami:
Evaluation of the effectiveness of simple nuclei-segmentation methods on Caenorhabditis elegans embryogenesis images. BMC Bioinform. 14: 295 (2013) - [j5]Koji Kyoda, Eru Adachi, Eriko Masuda, Yoko Nagai, Yoko Suzuki, Taeko Oguro, Mitsuru Urai, Ryoko Arai, Mari Furukawa, Kumiko Shimada, Junko Kuramochi, Eriko Nagai, Shuichi Onami:
WDDD: Worm Developmental Dynamics Database. Nucleic Acids Res. 41(Database-Issue): 732-737 (2013) - 2011
- [j4]Koji Kyoda, Kotaro Baba, Hiroaki Kitano, Shuichi Onami:
A proof of the DBRF-MEGN method, an algorithm for deducing minimum equivalent gene networks. Source Code Biol. Medicine 6: 12 (2011)
2000 – 2009
- 2007
- [j3]Shugo Hamahashi, Hiroaki Kitano, Shuichi Onami:
A system for measuring cell division patterns of early Caenorhabditis elegans embryos by using image processing and object tracking. Syst. Comput. Jpn. 38(11): 12-24 (2007) - 2005
- [j2]Shugo Hamahashi, Shuichi Onami, Hiroaki Kitano:
Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking. BMC Bioinform. 6: 125 (2005) - 2004
- [j1]Koji Kyoda, Kotaro Baba, Shuichi Onami, Hiroaki Kitano:
DBRF-MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants. Bioinform. 20(16): 2662-2675 (2004)
Coauthor Index
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