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ORCIDSoftwareX, Volume 7
Volume 7, January 2018
- Nelson B. Villoria
, Joshua Elliott, Christoph Müller, Jaewoo Shin, Lan Zhao, Carol X. Song:
Web-based access, aggregation, and visualization of future climate projections with emphasis on agricultural assessments. 15-22 - Garrett W. Melenka, Jason P. Carey:
Braid CAM: Braided composite analytical model. 23-27 - Jason R. Laura, Kelvin Rodriguez, Adam C. Paquette, Evin Dunn:
AutoCNet: A Python library for sparse multi-image correspondence identification for planetary data. 37-40 - Peter G. Lelièvre, Angela E. Carter-McAuslan, Michael W. Dunham, Drew J. Jones, Mariella Nalepa, Chelsea L. Squires, Cassandra J. Tycholiz, Marc A. Vallée, Colin Glennie Farquharson:
FacetModeller: Software for manual creation, manipulation and analysis of 3D surface-based models. 41-46 - Martin Mann, Hans-Peter Kahle, Matthias Beck, Bela Johannes Bender, Heinrich Spiecker, Rolf Backofen:
MICA: Multiple interval-based curve alignment. 53-58 - Jan Scheffel, Kristoffer Lindvall:
SIR - An efficient solver for systems of equations. 59-62 - Maxime Baudette, Seyed Reza Firouzi, Luigi Vanfretti:
The STRONgrid library: A modular and extensible software library for IEEE C37.118.2 compliant synchrophasor data mediation. 281-286 - Luigi Vanfretti, Gudrun M. Jonsdottir, Muhammad Shoaib Almas, Eldrich Rebello, S. R. Firouzi, Maxime Baudette:
Audur - A platform for synchrophasor-based power system wide-area control system implementation. 294-301 - Oleg K. Karaduta, Loutfouz Zaman:
Shk-9: A new tool in approach of glycoprotein annotation. 302-303 - Martin Masek, Chiou Peng Lam, Cameron Tranthim-Fryer, Bas Jansen, Kevin Baptist:
Sleep monitor: A tool for monitoring and categorical scoring of lying position using 3D camera data. 341-346 - Mattia Montanari, Nik Petrinic:
OpenGJK for C, C# and Matlab: Reliable solutions to distance queries between convex bodies in three-dimensional space. 352-355 - Roberto Vidmar, Nicola Creati:
QCOBJ a Python package to handle quantity-aware configuration files. 347-351 - Adrian R. G. Harwood, Joseph O'Connor, Jonathan Sanchez Muñoz, Marta Camps Santasmasas, Alistair J. Revell:
LUMA: A many-core, Fluid-Structure Interaction solver based on the Lattice-Boltzmann Method. 88-94 - Timofey Mukha, Mattias Liefvendahl:
Eddylicious: A Python package for turbulent inflow generation. 112-114 - M. J. Pankhurst, R. Fowler, L. Courtois, S. Nonni, F. Zuddas, R. C. Atwood, Graham R. Davis, Peter D. Lee:
Enabling three-dimensional densitometric measurements using laboratory source X-ray micro-computed tomography. 115-121 - Danny Petschke, Torsten E. M. Staab:
DLTPulseGenerator: A library for the simulation of lifetime spectra based on detector-output pulses. 122-128 - Kamyar Hasanzadeh:
IASM: Individualized activity space modeler. 138-142 - Suleiman Y. Yerima, Michael Loughlin, Sakir Sezer, John Moriarty, Mark McCann, Helen McAneney, Leeanne O'hara, Mark A. Tully, Paul S. Ell, Robert Miller, Geraldine Macdonald:
MobiQ: A modular Android application for collecting social interaction, repeated survey, GPS and photographic data. 143-149 - Yakubu Abdul-Salam:
A Stochastic Anaerobic Digestion Economic Assessment Tool (SADEAT). 190-197 - Samantha Zambo, K. Todd Holland, Nathaniel G. Plant, Kevin Duvieilh, Paul Elmore, Will Avera, Brian Bourgeois, A. Louise Perkins, David Lalejini:
MergeBathy (2015). 180-183 - Ronald R. Gutierrez, Jose A. Mallma, Francisco Núñez-González, Oscar Link, Jorge D. Abad:
Bedforms-ATM, an open source software to analyze the scale-based hierarchies and dimensionality of natural bed forms. 184-189 - Luis R. Izquierdo, Segismundo S. Izquierdo, William H. Sandholm:
EvoDyn-3s: A Mathematica computable document to analyze evolutionary dynamics in 3-strategy games. 226-233 - Jay Jay Billings, Andrew R. Bennett, Jordan H. Deyton, Kasper Gammeltoft, Jonah Graham, Dasha Gorin, Hari Krishnan, Menghan Li, Alexander J. McCaskey, Taylor Patterson, Robert Smith, Gregory R. Watson, Anna Wojtowicz:
The eclipse integrated computational environment. 234-244 - Collin J. Wilkinson, Yihong Z. Mauro, John C. Mauro:
RelaxPy: Python code for modeling of glass relaxation behavior. 255-258 - Danny Petschke, Torsten E. M. Staab:
Update (v1.2) to DLTPulseGenerator: A library for the simulation of lifetime spectra based on detector-output pulses. 259-262 - Md Mushfiqur Rahman, Yu Lei, Georgios Kalantzis:
QALMA: A computational toolkit for the analysis of quality protocols for medical linear accelerators in radiation therapy. 101-106 - Stefano Cherubin, Giovanni Agosta:
libVersioningCompiler: An easy-to-use library for dynamic generation and invocation of multiple code versions. 95-100 - Brian Ballsun-Stanton, Shawn A. Ross, Adela Sobotkova, Penny Crook:
FAIMS Mobile: Flexible, open-source software for field research. 47-52 - Danny Petschke, Torsten E. M. Staab:
Update (v1.1) to DLTPulseGenerator: A library for the simulation of lifetime spectra based on detector-output pulses. 171-173 - Andreas Henelius, Jari Torniainen:
MIDAS: Open-source framework for distributed online analysis of data streams. 156-161 - Timothy J. Truster:
DEIP, discontinuous element insertion Program - Mesh generation for interfacial finite element modeling. 162-170 - Christiaan H. Righolt, Barret A. Monchka, Salaheddin M. Mahmud:
From source code to publication: Code Diary, an automatic documentation parser for SAS. 222-225 - Florian Gerber, Kaspar Mösinger, Reinhard Furrer:
dotCall64: An R package providing an efficient interface to compiled C, C++, and Fortran code supporting long vectors. 217-221 - Mathieu Doucet, Ricardo M. Ferraz Leal, Tanner C. Hobson:
Web interface for reflectivity fitting. 287-293 - Siqin Meng, Rasmus Toft-Petersen, Lijie Hao, Klaus Habicht:
multiflexxlib: A Python package for data reduction and visualization for the cold-neutron multi energy wide angle analyzer MultiFLEXX. 309-312 - Ariella L. Gladstein, Consuelo D. Quinto-Cortés, Julian L. Pistorius, David P. Christy, Logan Gantner, Blake L. Joyce:
SimPrily: A Python framework to simplify high-throughput genomic simulations. 335-340 - Editorial Board. i
- K. Kraljic, Lutz Strüngmann, Elena Fimmel, Markus Gumbel:
Genetic Code Analysis Toolkit: A novel tool to explore the coding properties of the genetic code and DNA sequences. 12-14 - Daniel J. Silva, J. S. Amaral, V. S. Amaral:
Heatrapy: A flexible Python framework for computing dynamic heat transfer processes involving caloric effects in 1.5D systems. 373-382 - Rakib Hassan, Michael Gurnis, Simon Williams, R. Dietmar Müller:
SPGM: A Scalable PaleoGeomorphology Model. 263-272 - Gabriel Stockdale, Simone Tiberti, Daniela Camilletti, Gessica Sferrazza Papa, Ahmad Basshofi Habieb, Elisa Bertolesi, Gabriele Milani, Siro Casolo:
Kinematic collapse load calculator: Circular arches. 174-179 - Sten Ternström, Dennis Johansson, Andreas Selamtzis:
FonaDyn - A system for real-time analysis of the electroglottogram, over the voice range. 74-80 - Duc T. Nguyen, Blair Kaneshiro:
AudExpCreator: A GUI-based Matlab tool for designing and creating auditory experiments with the Psychophysics Toolbox. 328-334 - Deokjae Lee, S. Hwang, Sangmin Choi, B. Kahng:
Decremental dynamic algorithm to trace mutually connected clusters. 273-280 - Alberto Sartori, Nicola Giuliani, Mauro Bardelloni, Luca Heltai:
deal2lkit: A toolkit library for high performance programming in deal.II. 318-327 - Claudio Bustos Navarrete, María Gabriela Morales Malverde, Pedro Salcedo Lagos, Alejandro Díaz Mujica:
Buhos: A web-based systematic literature review management software. 360-372 - Alexander G. Demidov, Michael E. Fortunato, Coray M. Colina:
Update 0.2 to "pysimm: A python package for simulation of molecular systems". 70-73 - Sasha D. Hafner, Konrad Koch, Hélène Carrere, Sergi Astals, Sören Weinrich, Charlotte Rennuit:
Software for biogas research: Tools for measurement and prediction of methane production. 205-210 - Daniil Kazantsev, Valery Pickalov, Srikanth Nagella, Edoardo Pasca, Philip J. Withers:
TomoPhantom, a software package to generate 2D-4D analytical phantoms for CT image reconstruction algorithm benchmarks. 150-155 - Michael von Domaros, Eva Perlt, Johannes Ingenmey, Gwydyon Marchelli, Barbara Kirchner:
Peacemaker 2: Making clusters talk about binary mixtures and neat liquids. 356-359 - Benyuan Liu, Bin Yang, Canhua Xu, Junying Xia, Meng Dai, Zhenyu Ji, Fusheng You, Xiuzhen Dong, Xuetao Shi, Feng Fu:
pyEIT: A python based framework for Electrical Impedance Tomography. 304-308 - Wilko Rohlfs, Manuel Rietz, Benoit Scheid:
WaveMaker: The three-dimensional wave simulation tool for falling liquid films. 211-216 - Luigi Palatella, Fabio Grasso:
The EKF-AUS-NL algorithm implemented without the linear tangent model and in presence of parametric model error. 28-33 - Minjie Zhu, Frank McKenna, Michael H. Scott:
OpenSeesPy: Python library for the OpenSees finite element framework. 6-11 - Alastair G. Basden, N. A. Bharmal, D. Jenkins, T. J. Morris, James Osborn, J. Peng, L. Staykov:
The Durham Adaptive Optics Simulation Platform (DASP): Current status. 63-69 - Maxime Baudette, Marcelo Castro, Tin Rabuzin, Jan Lavenius, Tetiana Bogodorova, Luigi Vanfretti:
OpenIPSL: Open-Instance Power System Library - Update 1.5 to "iTesla Power Systems Library (iPSL): A Modelica library for phasor time-domain simulations". 34-36 - Elias Rudberg, Emanuel H. Rubensson, Pawel Salek, Anastasia Kruchinina:
Ergo: An open-source program for linear-scaling electronic structure calculations. 107-111 - Paul Bauer, Alexandre Barrozo, Miha Purg, Beat Anton Amrein, Mauricio Esguerra, Philippe Barrie Wilson, Dan Thomas Major, Johan Åqvist, Shina Caroline Lynn Kamerlin:
Q6: A comprehensive toolkit for empirical valence bond and related free energy calculations. 388-395 - Georgios Leontaris, Oswaldo Morales-Nápoles:
ANDURIL - A MATLAB toolbox for ANalysis and Decisions with UnceRtaInty: Learning from expert judgments. 313-317 - Joseph C. Ferguson, Francesco Panerai, Arnaud Borner, Nagi N. Mansour:
PuMA: the Porous Microstructure Analysis software. 81-87 - Alexander J. McCaskey, Eugene F. Dumitrescu, Dmitry I. Lyakh, M. Chen, W. Feng, Travis S. Humble:
A language and hardware independent approach to quantum-classical computing. 245-254 - Jeroen Steenbeek, Xavier Corrales, Mark Platts, Marta Coll:
Ecosampler: A new approach to assessing parameter uncertainty in Ecopath with Ecosim. 198-204 - Jack McCubbine, Fabio Caratori Tontini, Vaughan Stagpoole, Euan Smith, Grant O'brien:
Gsolve, a Python computer program with a graphical user interface to transform relative gravity survey measurements to absolute gravity values and gravity anomalies. 129-137 - Susi Lehtola, Conrad Steigemann, Micael J. T. Oliveira, Miguel A. L. Marques:
Recent developments in libxc - A comprehensive library of functionals for density functional theory. 1-5 - Exneyder A. Montoya-Araque, Ludger O. Suarez-Burgoa:
pyBIMstab: Application software for 2D slope stability analysis of block-in-matrix and homogeneous materials. 383-387
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