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ORCIDInternational Journal of High Performance Computing Applications, Volume 32
Volume 32, Number 1, January 2018
Introduction
- Jack J. Dongarra, Bernard Tourancheau:
Guest editors' note. 3
- Ewing L. Lusk, Ralph Butler, Steven C. Pieper:
Evolution of a minimal parallel programming model. 4-13 - Yiannis Georgiou, Emmanuel Jeannot, Guillaume Mercier
, Adèle Villiermet:
Topology-aware job mapping. 14-27 - Brice Videau, Kevin Pouget, Luigi Genovese, Thierry Deutsch, Dimitri Komatitsch, Frédéric Desprez, Jean-François Méhaut:
BOAST: A metaprogramming framework to produce portable and efficient computing kernels for HPC applications. 28-44 - Javier Conejero, Sandra Corella, Rosa M. Badia, Jesús Labarta:
Task-based programming in COMPSs to converge from HPC to big data. 45-60 - Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Geoffrey C. Fox:
Anatomy of machine learning algorithm implementations in MPI, Spark, and Flink. 61-73 - Charalampos Chalios, Giorgis Georgakoudis, Konstantinos Tovletoglou, Georgios Karakonstantis, Hans Vandierendonck, Dimitrios S. Nikolopoulos:
DARE. 74-88 - Anne Benoit, Loïc Pottier, Yves Robert:
Resilient co-scheduling of malleable applications. 89-103 - Moustafa AbdelBaky, Javier Diaz Montes, Manish Parashar:
Software-defined environments for science and engineering. 104-122 - Guillaume Aupy, Anne Benoit, Sicheng Dai, Loïc Pottier, Padma Raghavan, Yves Robert, Manu Shantharam:
Co-scheduling Amdahl applications on cache-partitioned systems. 123-138 - George Bosilca, Aurélien Bouteiller, Amina Guermouche, Thomas Hérault, Yves Robert, Pierre Sens, Jack J. Dongarra:
A failure detector for HPC platforms. 139-158 - Ewa Deelman, Tom Peterka, Ilkay Altintas, Christopher D. Carothers, Kerstin Kleese van Dam, Kenneth Moreland, Manish Parashar, Lavanya Ramakrishnan, Michela Taufer, Jeffrey S. Vetter:
The future of scientific workflows. 159-175 - Anne Benoit, Laurent Lefèvre, Anne-Cécile Orgerie, Issam Raïs:
Reducing the energy consumption of large-scale computing systems through combined shutdown policies with multiple constraints. 176-188 - David W. Walker:
Morton ordering of 2D arrays for efficient access to hierarchical memory. 189-203
Volume 32, Number 2, March 2018
Research Papers
- Fande Kong, Xiao-Chuan Cai:
Scalability study of an implicit solver for coupled fluid-structure interaction problems on unstructured meshes in 3D. 207-219 - Hartwig Anzt, Moritz Kreutzer, Eduardo Ponce, Gregory D. Peterson, Gerhard Wellein, Jack J. Dongarra:
Optimization and performance evaluation of the IDR iterative Krylov solver on GPUs. 220-230 - Michael O. Lam, Jeffrey K. Hollingsworth:
Fine-grained floating-point precision analysis. 231-245 - Lidia Kuan, Frederico Pratas, Leonel Sousa, Pedro Tomás:
MrBayes sMC3. 246-265 - Martin Kronbichler, Ababacar Diagne, Hanna Holmgren:
A fast massively parallel two-phase flow solver for microfluidic chip simulation. 266-287 - Alan Gray, Kevin Stratford:
A lightweight approach to performance portability with targetDP. 288-301 - Carmen Cotelo, María Aránzazu Amo Baladrón, Roland Aznar, Pablo Lorente, Pablo Rey, Aurelio Rodríguez:
On the successful coexistence of oceanographic operational services with other computational workloads. 302-313
Volume 32, Number 3, May 2018
Special Issue Papers
- Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo:
Parallelism in computational biology. 317-320 - Nathan T. Weeks, Glenn R. Luecke, Brandon M. Groth, Marina Kraeva, Li Ma, Luke M. Kramer, James E. Koltes, James M. Reecy:
High-performance epistasis detection in quantitative trait GWAS. 321-336 - Enzo Rucci, Carlos García, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto:
OSWALD. 337-350 - Ferdinando Auricchio, Marco Ferretti, Adrien Lefieux, Mirto Musci, Alessandro Reali, Santi Trimarchi, Alessandro Veneziani:
Parallelizing a finite element solver in computational hemodynamics. 351-362 - Suejb Memeti, Sabri Pllana:
A machine learning approach for accelerating DNA sequence analysis. 363-379 - Francesco Asnicar, Luca Masera, Emanuela Coller, Caterina Gallo, Nadir Sella, Thomas Tolio, Paolo Morettin, Luca Erculiani, Francesca Galante, Stanislau Semeniuta, Giulia Malacarne, Kristof Engelen, Andrea Argentini, Valter Cavecchia, Claudio Moser, Enrico Blanzieri:
NES2RA. 380-392 - Héctor Martínez, Sergio Barrachina, Maribel Castillo, Joaquín Tárraga, Ignacio Medina, Joaquín Dopazo, Enrique S. Quintana-Ortí:
A framework for genomic sequencing on clusters of multicore and manycore processors. 393-406 - Sebastian Daberdaku, Carlo Ferrari:
Computing voxelised representations of macromolecular surfaces. 407-432
Volume 32, Number 4, 2018
- Mark Asch, Terry Moore, Rosa M. Badia, Micah Beck, Peter H. Beckman, T. Bidot, François Bodin, Franck Cappello, Alok N. Choudhary, Bronis R. de Supinski, Ewa Deelman, Jack J. Dongarra, Anshu Dubey, Geoffrey C. Fox, H. Fu, Sergi Girona, William Gropp, Michael A. Heroux, Yutaka Ishikawa, Katarzyna Keahey, David E. Keyes, Bill Kramer, J.-F. Lavignon, Y. Lu, Satoshi Matsuoka, Bernd Mohr, Daniel A. Reed, S. Requena, Joel H. Saltz, Thomas C. Schulthess, Rick L. Stevens, D. Martin Swany, Alexander S. Szalay, William M. Tang, G. Varoquaux, Jean-Pierre Vilotte, Robert W. Wisniewski, Z. Xu, Igor Zacharov:
Big data and extreme-scale computing. 435-479
- Roman Wyrzykowski, Ewa Deelman:
Guest editor's note. 480-481
- Adrian Klusek, Pawel Topa, Jaroslaw Was, Robert Lubas:
An implementation of the Social Distances Model using multi-GPU systems. 482-495 - Krzysztof Jurczuk, Marek Kretowski, Johanne Bézy-Wendling:
GPU-based computational modeling of magnetic resonance imaging of vascular structures. 496-511 - Mindaugas Radziunas:
Modeling and simulations of broad-area edge-emitting semiconductor devices. 512-522 - Lukasz Szustak, Kamil Halbiniak, Lukasz Kuczynski, Joanna Wróbel, Adam Kulawik:
Porting and optimization of solidification application for CPU-MIC hybrid platforms. 523-539 - Heike Jagode, Anthony Danalis, Jack J. Dongarra:
Accelerating NWChem Coupled Cluster through dataflow-based execution. 540-551
- Tom Scogland, David Beckingsale:
Introduction. 553-554
- Tom Deakin, Simon McIntosh-Smith, Matt Martineau, Wayne P. Gaudin:
An improved parallelism scheme for deterministic discrete ordinates transport. 555-569 - Robert F. Bird, Patrick Gillies, Michael R. Bareford, Andy Herdman, Stephen A. Jarvis:
Performance Optimisation of Inertial Confinement Fusion Codes using Mini-applications. 570-581 - O. E. Bronson Messer, Eduardo F. D'Azevedo, Judy Hill, Wayne Joubert, Mark A. Berrill, Christopher Zimmer:
MiniApps derived from production HPC applications using multiple programing models. 582-593
Volume 32, Number 5, 2018
- Wesley Bland, Mattan Erez:
Special Issue on FTS. 597 - David E. Bernholdt, Wael R. Elwasif, Christos Kartsaklis, Seyong Lee, Tiffany M. Mintz:
Programmer-guided reliability for extreme-scale applications. 598-612 - Faisal Shahzad, Moritz Kreutzer, Thomas Zeiser, Rui Machado, Andreas Pieper, Georg Hager, Gerhard Wellein:
Building and utilizing fault tolerance support tools for the GASPI applications. 613-626 - Simon McIntosh-Smith, Rob Hunt, James Price, Alex Warwick Vesztrocy:
Application-based fault tolerance techniques for sparse matrix solvers. 627-640 - Omer Subasi, Tatiana V. Martsinkevich, Ferad Zyulkyarov, Osman S. Unsal, Jesús Labarta, Franck Cappello:
Unified fault-tolerance framework for hybrid task-parallel message-passing applications. 641-657 - Francesco Rizzi, Karla Morris, Khachik Sargsyan, Paul Mycek, Cosmin Safta, Olivier P. Le Maître, Omar M. Knio, Bert J. Debusschere:
Partial differential equations preconditioner resilient to soft and hard faults. 658-673
- José Ignacio Hidalgo, Francisco Fernández de Vega:
Special issue on "Evolutionary Algorithms on Parallel Architectures and Distributed Infrastructures". 674-675 - Rafael Nogueras, Carlos Cotta:
Analyzing self-★ island-based memetic algorithms in heterogeneous unstable environments. 676-692 - Diego Teijeiro, Xoán C. Pardo, Patricia González, Julio R. Banga, Ramón Doallo:
Towards cloud-based parallel metaheuristics. 693-705 - Francisco Chávez de la O, Francisco Fernández de Vega, Daniel Lanza, César Benavides-Álvarez, Juan Villegas-Cortéz, Leonardo Trujillo, Gustavo Olague, Graciela Román-Alonso:
Deploying massive runs of evolutionary algorithms with ECJ and Hadoop: Reducing interest points required for face recognition. 706-720 - Luis Acedo, Clara Burgos, José Ignacio Hidalgo, Victor Sánchez-Alonso, Rafael-Jacinto Villanueva, Javier Villanueva-Oller:
Calibrating a large network model describing the transmission dynamics of the human papillomavirus using a particle swarm optimization algorithm in a distributed computing environment. 721-728
- Amogh Katti, Giuseppe Di Fatta, Thomas J. Naughton, Christian Engelmann:
Epidemic failure detection and consensus for extreme parallelism. 729-743 - Jeremy Iverson, George Karypis:
A virtual memory manager optimized for node-level cooperative multi-tasking in memory constrained systems. 744-759 - Tarun Prabhu, William Gropp:
DAME: Runtime-compilation for data movement. 760-774
Volume 32, Number 6, 2018
- Pavan Balaji, Kai-Cheung Leung:
Introduction. - David del Rio Astorga, Manuel F. Dolz, Luis Miguel Sánchez, José Daniel García, Marco Danelutto, Massimo Torquati:
Finding parallel patterns through static analysis in C++ applications. - Baldomero Imbernón, José M. Cecilia, Horacio Emilio Pérez Sánchez, Domingo Giménez:
METADOCK: A parallel metaheuristic schema for virtual screening methods.
- Javier García-Blas, Christopher Brown:
High-level programming for heterogeneous and hierarchical parallel systems. - Marco Danelutto, Peter Kilpatrick, Gabriele Mencagli, Massimo Torquati:
State access patterns in stream parallel computations. - Issam Said, Pierre Fortin, Jean Luc Lamotte, Henri Calandra:
Leveraging the accelerated processing units for seismic imaging: A performance and power efficiency comparison against CPUs and GPUs. - Ana Moreton-Fernandez, Hector Ortega-Arranz, Arturo González-Escribano:
Controllers: An abstraction to ease the use of hardware accelerators. - David del Rio Astorga, Manuel F. Dolz, Luis Miguel Sánchez, Javier Fernández, José Daniel García:
An adaptive offline implementation selector for heterogeneous parallel platforms.
- Italo Epicoco, Silvia Mocavero, Andrew R. Porter, Stephen Pickles, Mike Ashworth, Giovanni Aloisio:
Hybridisation strategies and data structures for the NEMO ocean model. - Esthela Gallardo, Jérôme Vienne, Leonardo Fialho, Patricia J. Teller, James C. Browne:
Employing MPI_T in MPI Advisor to optimize application performance. - Mirco Altenbernd, Dominik Göddeke:
Soft fault detection and correction for multigrid. - Martin Schreiber, Pedro S. Peixoto, Terry Haut, Beth A. Wingate:
Beyond spatial scalability limitations with a massively parallel method for linear oscillatory problems.
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