Computer Methods and Programs in Biomedicine, Volume 196

Volume 196, November 2020

Section IV: Classification and interpretation

• 
  Muhammad Waqas, Tasawar Hayat, Ahmed Alsaedi, Waqar Azeem Khan:
  Analytical evaluation of Oldroyd-B nanoliquid under thermo-solutal Robin conditions and stratifications. 105474

Section II: Biomedical signal and image processing methods

• 
  Laura I. Bogatu, Simona Turco, Massimo Mischi, Pierre Woerlee, R. Arthur Bouwman, Erik Korsten, Jens Muehlsteff:
  A modelling framework for assessment of arterial compliance by fusion of oscillometry and pulse wave velocity information. 105492
• 
  Zhongshuo Zhuo, Jianping Huang, Ke Lu, Daru Pan, Shouting Feng:
  A size-invariant convolutional network with dense connectivity applied to retinal vessel segmentation measured by a unique index. 105508

Section V: Others

• 
  Emily C. Voldal, Navneet R. Hakhu, Fan Xia, Patrick J. Heagerty, James P. Hughes:
  swCRTdesign: An RPackage for Stepped Wedge Trial Design and Analysis. 105514

Section IV: Classification and interpretation

• 
  Marco Magliulo, Jakub Lengiewicz, Andreas Zilian, Lars A. A. Beex:
  Beam-inside-beam contact: Mechanical simulations of slender medical instruments inside the human body. 105527

Section III: Modelling & Simulation

• 
  Somaya Hashem, Mahmoud ElHefnawi, Shahira M. Habashy, Mohamed Eladawy, Gamal Esmat, Wafaa Elakel, Ashraf Omar Abdelazziz, Mohamed Mahmoud Nabeel, Ahmed Hosni Abdelmaksoud, Tamer Mahmoud Elbaz, Hend Ibrahim Shousha:
  Machine Learning Prediction Models for Diagnosing Hepatocellular Carcinoma with HCV-related Chronic Liver Disease. 105551

Section IV: Classification and interpretation

• 
  Biljana Mileva-Boshkoska, Dragana Miljkovic, Anita Valmarska, Dimitrios A. Gatsios, George Rigas, Spyridon Konitsiotis, Kostas M. Tsiouris, Dimitrios I. Fotiadis, Marko Bohanec:
  Decision Support for Medication Change of Parkinson's Disease Patients. 105552
• 
  C. Erisken, A. Tsiantis, T. D. Papathanasiou, E. G. Karvelas:
  Collagen fibril diameter distribution affects permeability of ligament tissue: A computational study on healthy and injured tissues. 105554
• 
  Cheng Lei, Yu Wang, Jia Zhao, Kexun Li, Hua Jiang, Qi Wang:
  A patient specific forecasting model for human albumin based on deep neural networks. 105555

Section V: Others

• 
  Ayman Diyab Alahmar, Matteo Ermando Crupi, Rachid Benlamri:
  Ontological framework for standardizing and digitizing clinical pathways in healthcare information systems. 105559

Section IV: Classification and interpretation

• 
  Sara Rostami, Mohammad Amin Mozoun, Davood Toghraie, Majid Zarringhalam, Aysan Shahsavar Goldanlou:
  Insight into the significance of blood flow inside stenosis coronary jointed with bypass vein: The case of anemic, normal, and hypertensive individuals. 105560

Section II: Biomedical signal and image processing methods

• 
  Y. M. Bozhok, O. Golovko, A. G. Nikonenko:
  nPAsym: an open-source plugin for ImageJ to quantify nuclear shape asymmetry. 105562

Section IV: Classification and interpretation

• 
  Zohre Hasanzade, Heidar Raissi:
  Molecular mechanism for the encapsulation of the doxorubicin in the cucurbit[n]urils cavity and the effects of diameter, protonation on loading and releasing of the anticancer drug: Mixed quantum mechanical/ molecular dynamics simulations. 105563

Section V: Others

• 
  Faisal Shah, Muhammad Ijaz Khan, Tasawar Hayat, Shaher Momani, M. Imran Khan:
  Cattaneo-Christov heat flux (CC model) in mixed convective stagnation point flow towards a Riga plate. 105564

Section III: Modelling & Simulation

• 
  Lei Wang, Zhiqiang Zhao, Yanhong Luo, Hongmei Yu, Shuqing Wu, Xiao-Lu Ren, ChuChu Zheng, XueQian Huang:
  Classifying 2-year recurrence in patients with dlbcl using clinical variables with imbalanced data and machine learning methods. 105567

Section IV: Classification and interpretation

• 
  David Manuel Folgado-de la Rosa, Antonio Palazón-Bru, Vicente Francisco Gil-Guillén:
  A method to validate scoring systems based on logistic regression models to predict binary outcomes via a mobile application for Android with an example of a real case. 105570

Section II: Biomedical signal and image processing methods

• 
  Dharmesh Singh, Virendra Kumar, Chandan J. Das, Anup Singh, Amit Mehndiratta:
  Segmentation of prostate zones using probabilistic atlas-based method with diffusion-weighted MR images. 105572

Section IV: Classification and interpretation

• 
  Jinli He, Youqing Wang:
  Blood glucose concentration prediction based on kernel canonical correlation analysis with particle swarm optimization and error compensation. 105574

Section II: Biomedical signal and image processing methods

• 
  Asif Iqbal Khan, Junaid Latief Shah, Mudasir Bhat:
  CoroNet: A deep neural network for detection and diagnosis of COVID-19 from chest x-ray images. 105581

Section III: Modelling & Simulation

• 
  Hiroaki Fukunishi, Mitsuki Nishiyama, Yuan Luo, Masahiro Kubo, Yasuki Kobayashi:
  Alzheimer-type dementia prediction by sparse logistic regression using claim data. 105582

Section II: Biomedical signal and image processing methods

• 
  Neil J. Cronin, Taija Finni, Olivier Seynnes:
  Using deep learning to generate synthetic B-mode musculoskeletal ultrasound images. 105583

Section IV: Classification and interpretation

• 
  Mugahed A. Al-antari, Seung-Moo Han, Tae-Seong Kim:
  Evaluation of deep learning detection and classification towards computer-aided diagnosis of breast lesions in digital X-ray mammograms. 105584

Section III: Modelling & Simulation

• 
  Afeez Abidemi, Nur Arina B. Aziz:
  Optimal control strategies for dengue fever spread in Johor, Malaysia. 105585

Section V: Others

• 
  Katrin Krumbholz, Alexander James Hardy, Jessica de Boer:
  Automated extraction of auditory brainstem response latencies and amplitudes by means of non-linear curve registration. 105595

Section II: Biomedical signal and image processing methods

• 
  Choon-Hian Goh, Li Kuo Tan, Nigel H. Lovell, Siew-Cheok Ng, Tan Maw Pin, Einly Lim:
  Robust PPG motion artifact detection using a 1-D convolution neural network. 105596

Section IV: Classification and interpretation

• 
  Chethan K N, Ogulcan Guldeniz, Shyamasunder Bhat N, Mohammad Zuber, Satish Shenoy B:
  Wear estimation of trapezoidal and circular shaped hip implants along with varying taper trunnion radiuses using finite element method. 105597

Section III: Modelling & Simulation

• 
  Qingqi Hong, Qingde Li, Beizhan Wang, Jie Tian, Fei Xu, KunHong Liu, Xuan Cheng:
  High-quality vascular modeling and modification with implicit extrusion surfaces for blood flow computations. 105598

Section II: Biomedical signal and image processing methods

• 
  Roberto Romero-Oraá, María García, Javier Oraá-Pérez, María Isabel López, Roberto Hornero:
  A robust method for the automatic location of the optic disc and the fovea in fundus images. 105599

Section III: Modelling & Simulation

• 
  Kun Wang, Chun-Heng Ho, Chunpeng Tian, Yan Zong:
  Optical health analysis of visual comfort for bright screen display based on back propagation neural network. 105600

Section II: Biomedical signal and image processing methods

• 
  Jiao Du, Meie Fang, Yufeng Yu, Gang Lu:
  An adaptive two-scale biomedical image fusion method with statistical comparisons. 105603

Section IV: Classification and interpretation

• 
  Shu Lih Oh, Jahmunah Vicnesh, Ooi Chui Ping, Ru San Tan, Edward J. Ciaccio, Toshitaka Yamakawa, Masayuki Tanabe, Makiko Kobayashi, U. Rajendra Acharya:
  Classification of heart sound signals using a novel deep WaveNet model. 105604

Section III: Modelling & Simulation

• 
  Reza Rahpeima, Madjid Soltani, Farshad Moradi Kashkooli:
  Numerical study of microwave induced thermoacoustic imaging for initial detection of cancer of breast on anatomically realistic breast phantom. 105606

Section II: Biomedical signal and image processing methods

• 
  Dinesh Kumar Atal, Mukhtiar Singh:
  Arrhythmia Classification with ECG signals based on the Optimization-Enabled Deep Convolutional Neural Network. 105607

Section IV: Classification and interpretation

• 
  Luca Brunese, Francesco Mercaldo, Alfonso Reginelli, Antonella Santone:
  Explainable Deep Learning for Pulmonary Disease and Coronavirus COVID-19 Detection from X-rays. 105608

Section V: Others

• 
  Manik Sharma, Samriti Sharma, Gurvinder Singh:
  Remote monitoring of physical and mental state of 2019-nCoV victims using social internet of things, fog and soft computing techniques. 105609

Section II: Biomedical signal and image processing methods

• 
  Ming Li, Shixiong Chen, Zhen Gao, Wanqing Wu, Lingzheng Xu:
  Physiological explicit of delayed psychological stress response induced by extra neural regulation. 105610
• 
  Guohua Shi, Jiawen Wang, Yan Qiang, Xiaotang Yang, Juanjuan Zhao, Rui Hao, Wenkai Yang, Qianqian Du, Ntikurako Guy-Fernand Kazihise:
  Knowledge-guided synthetic medical image adversarial augmentation for ultrasonography thyroid nodule classification. 105611

Section III: Modelling & Simulation

• 
  Elif Dil, Duru Karasoy:
  gsem: A Stata command for parametric joint modelling of longitudinal and accelerated failure time models. 105612
• 
  Rafael Agujetas, R. Barrio-Perotti, Conrado Ferrera, A. Pandal-Blanco, D. Keith Walters, A. Fernández-Tena:
  Construction of a hybrid lung model by combining a real geometry of the upper airways and an idealized geometry of the lower airways. 105613

Section II: Biomedical signal and image processing methods

• 
  Da-in Eun, Ilsang Woo, BeomHee Park, Namkug Kim, Sang Min Lee, Joon Beom Seo:
  CT kernel conversions using convolutional neural net for super-resolution with simplified squeeze-and-excitation blocks and progressive learning among smooth and sharp kernels. 105615

Section IV: Classification and interpretation

• 
  Osamah Shihab Albahri, Jameel R. Al-Obaidi, A. A. Zaidan, Ahmed Shihab Albahri, B. B. Zaidan, Mahmood Maher Salih, Abdulhadi Qays, Kareem Abbas Dawood, R. T. Mohammed, Karrar Hameed Abdulkareem, A. M. Aleesa, Abdullah Hussein Alamoodi, Mohammed A. Chyad, Che Zalina Zulkifli:
  Helping doctors hasten COVID-19 treatment: Towards a rescue framework for the transfusion of best convalescent plasma to the most critical patients based on biological requirements via ml and novel MCDM methods. 105617

Section III: Modelling & Simulation

• 
  Sivasankari Sivasankari, Venkatesh Balasubramanian:
  Developing a heuristic relationship to predict the spinal injury during vertical impact for autonomous vehicle and bio environment. 105618

Section II: Biomedical signal and image processing methods

• 
  Tomás Majtner, Esmaeil S. Nadimi, Knud Bonnet Yderstraede, Victoria Blanes-Vidal:
  Non-invasive detection of diabetic complications via pattern analysis of temporal facial colour variations. 105619

Section V: Others

• 
  Sunyi Zheng, Xiaonan Cui, Marleen Vonder, Raymond N. J. Veldhuis, Zhaoxiang Ye, Rozemarijn Vliegenthart, Matthijs Oudkerk, Peter M. A. van Ooijen:
  Deep learning-based pulmonary nodule detection: Effect of slab thickness in maximum intensity projections at the nodule candidate detection stage. 105620

Section II: Biomedical signal and image processing methods

• 
  Bozidar Potocnik, Jurij Munda, Milan Reljic, Ksenija Rakic, Jure Knez, Veljko Vlaisavljevic, Gasper Sedej, Boris Cigale, Ales Holobar, Damjan Zazula:
  Public database for validation of follicle detection algorithms on 3D ultrasound images of ovaries. 105621
• 
  Ming Zhao, Wei Yang, Yu Lu, Kelvin Kian Loong Wong:
  A novel U-Net approach to segment the cardiac chamber in magnetic resonance images with ghost artifacts. 105623

Section V: Others

• 
  Lijue Liu, Yongxia Jiao, Xihong Li, Yan Ouyang, Danni Shi:
  Machine learning algorithms to predict early pregnancy loss after in vitro fertilization-embryo transfer with fetal heart rate as a strong predictor. 105624

Section III: Modelling & Simulation

• 
  W. M. Faizal, Nik Nazri Nik Ghazali, C. Y. Khor, Irfan Anjum Badruddin, M. Z. Zainon, Aznijar Ahmad Yazid, Norliza Binti Ibrahim, Roziana M. Razi:
  Computational fluid dynamics modelling of human upper airway: A review. 105627
• 
  Kyriaki Saiti, Martin Macas, Lenka Lhotská, Katerina Stechová, Pavlína Pithová:
  Ensemble methods in combination with compartment models for blood glucose level prediction in type 1 diabetes mellitus. 105628
• 
  Haipeng Liu, Shanxing Ou, Panli Liu, Yuhang Xu, Yinglan Gong, Ling Xia, Xinyi Leng, Thomas Wai Hong Leung, Lin Shi, Dingchang Zheng:
  Effect of microcirculatory resistance on coronary blood flow and instantaneous wave-free ratio: A computational study. 105632

Section V: Others

• 
  Domen Verber, Damijan Novak, Mladen Borovic, Jani Dugonik, Dusan Flisar:
  EQUIDopa: A responsive web application for the levodopa equivalent dose calculator. 105633

Section II: Biomedical signal and image processing methods

• 
  Delfina Braggio, Jimena Barbeito-Andrés, Paula González, Benedikt Hallgrímsson, Ignacio Larrabide:
  VBM sensitivity to localization and extent of mouse brain lesions: A simulation approach. 105636
• 
  Han Liu, Zhengbo Zhao, Xiao Chen, Rong Yu, Qiang She:
  Using the VQ-VAE to improve the recognition of abnormalities in short-duration 12-lead electrocardiogram records. 105639

Section III: Modelling & Simulation

• 
  Muhmmad Zamir, Zahir Shah, Fawad Nadeem, Arif Memood, Hussam Alrabaiah, Poom Kumam:
  Non Pharmaceutical Interventions for Optimal Control of COVID-19. 105642
• 
  Sunil More, A. Kotiya, Ankit Kotia, Subrata Kumar Ghosh, Leonidas A. Spyrou, Ioannis E. Sarris:
  Rheological properties of synovial fluid due to viscosupplements: A review for osteoarthritis remedy. 105644

Section II: Biomedical signal and image processing methods

• 
  Yusuf Yargi Baydilli, Ümit Atila, Abdullah Elen:
  Learn from one data set to classify all - A multi-target domain adaptation approach for white blood cell classification. 105645

Section III: Modelling & Simulation

• 
  Hong-Tzong Yau, Shu-Wei Liao, Chia-Hao Chang:
  Modeling of digital dental articulator and its accuracy verification using optical measurement. 105646
• 
  Araz R. Kivi, Nima Sedaghatizadeh, Benjamin S. Cazzolato, Anthony Zander, Ross Roberts-Thomson, Adam J. Nelson, Maziar Arjomandi:
  Fluid structure interaction modelling of aortic valve stenosis: Effects of valve calcification on coronary artery flow and aortic root hemodynamics. 105647

Section II: Biomedical signal and image processing methods

• 
  Xiaoke Chai, Zhimin Zhang, Kai Guan, Tengyu Zhang, Jinxiu Xu, Haijun Niu:
  Effects of fatigue on steady state motion visual evoked potentials: Optimised stimulus parameters for a zoom motion-based brain-computer interface. 105650

Section III: Modelling & Simulation

• 
  Dan Han, Jiayi Liu, Zhonghua Sun, Yu Cui, Yi He, Zhenghan Yang:
  Deep learning analysis in coronary computed tomographic angiography imaging for the assessment of patients with coronary artery stenosis. 105651

Section II: Biomedical signal and image processing methods

• 
  J. Beschi Raja, S. Chenthur Pandian:
  PSO-FCM based data mining model to predict diabetic disease. 105659

Section III: Modelling & Simulation

• 
  Gustavo Barbosa Libotte, Fran Sérgio Lobato, Gustavo Mendes Platt, Antônio José da Silva Neto:
  Determination of an optimal control strategy for vaccine administration in COVID-19 pandemic treatment. 105664

Section II: Biomedical signal and image processing methods

• 
  Edward J. Ciaccio, James Coromilas, Elaine Y. Wan, Hirad Yarmohammadi, Deepak S. Saluja, Angelo B. Biviano, Andrew L. Wit, Nicholas S. Peters, Hasan Garan:
  Slow uniform electrical activation during sinus rhythm is an indicator of reentrant VT isthmus location and orientation in an experimental model of myocardial infarction. 105666
• 
  Shoukun Chen, Kaili Xu, Xin Zheng, Jishuo Li, Bingjie Fan, Xiwen Yao, Zhengrong Li:
  Linear and nonlinear analyses of normal and fatigue heart rate variability signals for miners in high-altitude and cold areas. 105667
• 
  Fuyuan Mei, Dong Zhang, Yan Yang:
  Improved non-local self-similarity measures for effective speckle noise reduction in ultrasound images. 105670

Section IV: Classification and interpretation

• 
  Lizhen Shao, Yang You, Haipeng Du, Dongmei Fu:
  Classification of ADHD with fMRI data and multi-objective optimization. 105676

Section III: Modelling & Simulation

• 
  Bing Ji, Yao Zhang, Changqing Zhen, Michael J. Fagan, Qing Yang:
  Mathematical modeling of canonical and non-canonical NF-κB pathways in TNF stimulation. 105677
• 
  Raja Dhason, Sandipan Roy, Shubhabrata Datta:
  A biomechanical study on the laminate stacking sequence in composite bone plates for vancouver femur B1 fracture fixation. 105680
• 
  Kung-Min Wang, Kung-Jeng Wang, Bunjira Makond:
  Survivability modelling using Bayesian network for patients with first and secondary primary cancers. 105686

Section II: Biomedical signal and image processing methods

• 
  Jingyu Du, Beiji Zou, Changlong Chen, Ziwen Xu, Qing Liu:
  Automatic microaneurysm detection in fundus image based on local cross-section transformation and multi-feature fusion. 105687

Section IV: Classification and interpretation

• 
  Susanna Summa, Gennaro Tartarisco, Martina Favetta, Alina Buzachis, Alberto Romano, Giuseppe Massimo Bernava, A. Sancesario, Gessica Vasco, Giovanni Pioggia, Maurizio Petrarca, Enrico Castelli, Enrico Bertini, Tommaso Schirinzi:
  Validation of low-cost system for gait assessment in children with ataxia. 105705

Section III: Modelling & Simulation

• 
  Nichal Gentilal, Pedro Cavaleiro Miranda:
  Heat transfer during TTFields treatment: Influence of the uncertainty of the electric and thermal parameters on the predicted temperature distribution. 105706
• 
  Luiz Henrique Alves Monteiro, D. M. Gandini, Pedro H. T. Schimit:
  The influence of immune individuals in disease spread evaluated by cellular automaton and genetic algorithm. 105707

Section V: Others

• 
  Xin Chen, Xi Zhou, Huan Li, Jinlan Li, Hua Jiang:
  The value of WeChat application in chronic diseases management in China. 105710

Section III: Modelling & Simulation

• 
  Mizuho Nishio, Sho Koyasu, Shunjiro Noguchi, Takao Kiguchi, Kanako Nakatsu, Thai Akasaka, Hiroki Yamada, Kyo Itoh:
  Automatic detection of acute ischemic stroke using non-contrast computed tomography and two-stage deep learning model. 105711

Section IV: Classification and interpretation

• 
  Carlo Ricciardi, Giovanni Improta, Francesco Amato, Giuseppe Cesarelli, Maria Romano:
  Classifying the type of delivery from cardiotocographic signals: A machine learning approach. 105712

Section II: Biomedical signal and image processing methods

• 
  Mansu Kim, Ji Sun Kim, Jinyoung Youn, Hyunjin Park, Jin Whan Cho:
  GraphNet-based imaging biomarker model to explain levodopa-induced dyskinesia in Parkinson's disease. 105713

Section III: Modelling & Simulation

• 
  Wei Zeng, Yin Liu, Xue Hou:
  Biomechanical evaluation of internal fixation implants for femoral neck fractures: A comparative finite element analysis. 105714

Section II: Biomedical signal and image processing methods

• 
  Zachary A. Vesoulis, Paul G. Gamble, Siddharth Jain, Nathalie M. El Ters, Steve M. Liao, Amit M. Mathur:
  WU-NEAT: A clinically validated, open-source MATLAB toolbox for limited-channel neonatal EEG analysis. 105716