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ORCIDComputational Biology and Chemistry, Volume 65
Volume 65, December 2016
- Shu-Bo Zhang, Qiang-Rong Tang:
Predicting protein subcellular localization based on information content of gene ontology terms. 1-7 - Ivan Semenyuta
, Vasyl V. Kovalishyn, Vsevolod Tanchuk, Stepan Pilyo, Vladimir Zyabrev, Volodymyr Blagodatnyy, Olena Trokhimenko, Volodymyr Brovarets, Larysa Metelytsia:
1, 3-Oxazole derivatives as potential anticancer agents: Computer modeling and experimental study. 8-15 - Jing-Guo Wu, Qing-Wei Jia, Yong Li, Fei-Fei Cao, Xishan Zhang, Cong Liu:
Investigating ego modules involved in TGFβ3-induced chondrogenesis in mesenchymal stem cells based on ego network. 16-20 - Colin Kern, Li Liao:
A post-decoding re-ranking algorithm for predicting interacting residues in proteins with hidden Markov models incorporating long-distance information. 21-28 - Mohammad Uzzal Hossain, Arafat Rahman Oany, Shah Adil Ishtiyaq Ahmad, Md. Anayet Hasan, Md. Arif Khan, Md Al Ahad Siddikey:
Identification of potential inhibitor and enzyme-inhibitor complex on trypanothione reductase to control Chagas disease. 29-36 - Renu Vyas, Sanket Bapat, Esha Jain, Muthukumarasamy Karthikeyan, Sanjeev S. Tambe, Bhaskar D. Kulkarni:
Building and analysis of protein-protein interactions related to diabetes mellitus using support vector machine, biomedical text mining and network analysis. 37-44 - Ana D. Amic, Zoran Markovic, Jasmina M. Dimitric Markovic, Svetlana R. Jeremic, Bono Lucic, Dragan Amic:
Free radical scavenging and COX-2 inhibition by simple colon metabolites of polyphenols: A theoretical approach. 45-53 - Zhong Ni, Xiting Wang, Tianchen Zhang, Rongzhong Jin:
Molecular dynamics simulations reveal the allosteric effect of F1174C resistance mutation to ceritinib in ALK-associated lung cancer. 54-60 - Pradipta Ranjan Rauta, Sarbani Ashe, Debasis Nayak, Bismita Nayak:
In silico identification of outer membrane protein (Omp) and subunit vaccine design against pathogenic Vibrio cholerae. 61-68 - Seketoulie Keretsu, Rosy Sarmah:
Weighted edge based clustering to identify protein complexes in protein-protein interaction networks incorporating gene expression profile. 69-79 - Money Gupta, Rashi Chauhan, Yamuna Prasad, Gulshan Wadhwa, Chakresh Kumar Jain:
Protein-protein interaction and molecular dynamics analysis for identification of novel inhibitors in Burkholderia cepacia GG4. 80-90 - Seema Patel:
In silico analysis of Hepatitis C virus (HCV) polyprotein domains and their comparison with other pathogens and allergens to gain insight on pathogenicity mechanisms. 91-102 - Boudour Khabou, Olfa Siala-Sahnoun, Lamia Gargouri, Emna Mkaouar-Rebai, Leila Keskes, Mongia Hachicha, Faiza Fakhfakh:
In silico investigation of the impact of synonymous variants in ABCB4 gene on mRNA stability/structure, splicing accuracy and codon usage: Potential contribution to PFIC3 disease. 103-109 - Manijeh Mahdavi, Violaine Moreau:
In silico designing breast cancer peptide vaccine for binding to MHC class I and II: A molecular docking study. 110-116 - Davorka R. Jandrlic:
SVM and SVR-based MHC-binding prediction using a mathematical presentation of peptide sequences. 117-127 - Venura Herath:
Small family, big impact: In silico analysis of DREB2 transcription factor family in rice. 128-139 - Shihai Yan, Lishan Yao, Baotao Kang, Jin Yong Lee:
Solvent effect on hydrogen bonded Tyr⋯Asp⋯Arg triads: Enzymatic catalyzed model system. 140-147
- Xin Geng, Jiaogen Zhou, Jihong Guan:
Side-chain dynamics analysis of KE07 series. 148-153 - David Agustriawan, Chien-Hung Huang, Jim Jinn-Chyuan Sheu, Shan-Chih Lee, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, Ka-Lok Ng:
DNA methylation-regulated microRNA pathways in ovarian serous cystadenocarcinoma: A meta-analysis. 154-164 - Haozhe Xie, Jie Li, Qiaosheng Zhang, Yadong Wang:
Comparison among dimensionality reduction techniques based on Random Projection for cancer classification. 165-172 - Fang Liang, Lili Hao, Jinyue Wang, Shuo Shi, Jing-Fa Xiao, Rujiao Li:
BS-RNA: An efficient mapping and annotation tool for RNA bisulfite sequencing data. 173-177 - Carmen H. S. Chan, Sophie Octavia, Vitali Sintchenko, Ruiting Lan:
SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes. 178-184 - Yaxuan Wang, Jin-Xing Liu, Ying-Lian Gao, Chun-Hou Zheng, Junliang Shang:
Differentially expressed genes selection via Laplacian regularized low-rank representation method. 185-192 - Hye-Young Jung, Sangseob Leem, Sungyoung Lee, Taesung Park:
A novel fuzzy set based multifactor dimensionality reduction method for detecting gene-gene interaction. 193-202 - Chang Lu, Jun Wang, Zili Zhang, Pengyi Yang, Guo-Xian Yu:
NoisyGOA: Noisy GO annotations prediction using taxonomic and semantic similarity. 203-211
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