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ORCIDComputational Biology and Chemistry, Volume 53
Volume 53, Part A, December 2014
- Yannis Almirantis, Peter F. Arndt, Wentian Li
, Astero Provata:
Editorial: Complexity in genomes. 1-4 - Astero Provata, Catherine Rouvas-Nicolis, Grégoire Nicolis:
Complexity measures for the evolutionary categorization of organisms. 5-14 - Germinal Cocho, Pedro Miramontes, Ricardo Mansilla, Wentian Li:
Bacterial genomes lacking long-range correlations may not be modeled by low-order Markov chains: The role of mixing statistics and frame shift of neighboring genes. 15-25 - S. S. Melnik, O. V. Usatenko:
Entropy and long-range correlations in DNA sequences. 26-31 - Maria Papapetrou, Dimitris Kugiumtzis:
Investigating long range correlation in DNA sequences using significance tests of conditional mutual information. 32-42 - Yulia M. Suvorova, Maria A. Korotkova, Eugene V. Korotkov:
Comparative analysis of periodicity search methods in DNA sequences. 43-48 - Zuo-Bing Wu:
Analysis of correlation structures in the Synechocystis PCC6803 genome. 49-58 - Kun Gao, Jonathan Miller:
Human-chimpanzee alignment: Ortholog exponentials and paralog power laws. 59-70 - Francisco Dios, Guillermo Barturen, Ricardo Lebrón, Antonio Rueda, Michael Hackenberg, José L. Oliver:
DNA clustering and genome complexity. 71-78 - Jose M. Muiño, Ercan E. Kuruoglu, Peter F. Arndt:
Evidence of a cancer type-specific distribution for consecutive somatic mutation distances. 79-83 - Giannis Tsiagkas, Christoforos Nikolaou, Yannis Almirantis:
Orphan and gene related CpG Islands follow power-law-like distributions in several genomes: Evidence of function-related and taxonomy-related modes of distribution. 84-96 - Juan Esteban Gallo, José Fernando Muñoz, Elizabeth Misas, Juan Guillermo McEwen, Oliver Keatinge Clay:
The complex task of choosing a de novo assembly: Lessons from fungal genomes. 97-107 - Wentian Li, Jan Freudenberg:
Characterizing regions in the human genome unmappable by next-generation-sequencing at the read length of 1000 bases. 108-117 - Jianfeng Zhu, Wei-Mou Zheng:
Self-organizing approach for meta-genomes. 118-124 - Ivan Junier:
Conserved patterns in bacterial genomes: A conundrum physically tailored by evolutionary tinkering. 125-133 - Christoforos Nikolaou:
Menzerath-Altmann law in mammalian exons reflects the dynamics of gene structure evolution. 134-143 - Naruemon Pratanwanich, Pietro Liò:
Exploring the complexity of pathway-drug relationships using latent Dirichlet allocation. 144-152 - Lamia Zaghloul, Guénola Drillon, Rasha E. Boulos, Françoise Argoul, Claude Thermes, Alain Arneodo, Benjamin Audit:
Large replication skew domains delimit GC-poor gene deserts in human. 153-165 - Guanghong Zuo, Qiang Li, Bailin Hao:
On K-peptide length in composition vector phylogeny of prokaryotes. 166-173
Volume 53, Part B, December 2014
- Shi Jing Lu, Abdul Hakim Mohamed Salleh, Mohd Saberi Mohamad, Safaai Deris, Sigeru Omatu, Michifumi Yoshioka:
Identification of gene knockout strategies using a hybrid of an ant colony optimization algorithm and flux balance analysis to optimize microbial strains. 175-183 - Yu-Dong Shang, Ji-Long Zhang, Yan Wang, Hong-Xing Zhang, Qing-Chuan Zheng:
Molecular simulation investigation on the interaction between barrier-to-autointegration factor dimer or its Gly25Glu mutant and LEM domain of emerin. 184-190 - Tien-Dzung Tran, Yung-Keun Kwon:
Hierarchical closeness efficiently predicts disease genes in a directed signaling network. 191-197 - Abhigyan Nath, Karthikeyan Subbiah:
Inferring biological basis about psychrophilicity by interpreting the rules generated from the correctly classified input instances by a classifier. 198-203 - Jiangwei Yang, Ning Zhang, Xiaoxiao Mi, Liangliang Wu, Rui Ma, Xi Zhu, Lei Yao, Xin Jin, Huaijun Si, Di Wang:
Identification of miR159s and their target genes and expression analysis under drought stress in potato. 204-213 - Zahida Parveen, Zohra Bibi, Nousheen Bibi, Juergen Neesen, Sajid Rashid:
Disruption of murine Tcte3-3 induces tissue specific apoptosis via co-expression of Anxa5 and Pebp1. 214-225 - Prapasiri Pongprayoon:
How do the protonation states of E296 and D312 in OmpF and D299 and D315 in homologous OmpC affect protein structure and dynamics? Simulation studies. 226-234 - Sercan Ergün, Serdar Oztuzcu:
Computational analysis of 3′UTR region of CASP3 with respect to miRSNPs and SNPs in targetting miRNAs. 235-241 - Erin R. Shellman, Yu Chen, Xiaoxia Lin, Charles F. Burant, Santiago Schnell:
Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study. 242-250 - Márcio Dorn, Mariel Barbachan e Silva, Luciana S. Buriol, Luís C. Lamb:
Three-dimensional protein structure prediction: Methods and computational strategies. 251-276 - Babar Aslam, Jamil Ahmad, Amjad Ali, Rehan Zafar Paracha, Samar Hayat Khan Tareen, Umar Khan Niazi, Tariq Saeed:
On the modelling and analysis of the regulatory network of dengue virus pathogenesis and clearance. 277-291 - Shinq-Jen Wu, Cheng-Tao Wu:
Seeding-inspired chemotaxis genetic algorithm for the inference of biological systems. 292-307 - Leon Bichmann, Yi-Ting Wang, Wolfgang B. Fischer:
Docking assay of small molecule antivirals to p7 of HCV. 308-317 - Vandna Sharma, Kalyan Sundar Ghosh:
Involvement of non-polyalanine (polyA) residues in aggregation of polyA proteins: Clue for inhibition of aggregation. 318-323 - Xiaoyong Pan, Lin Zhu, Yong-Xian Fan, Junchi Yan:
Predicting protein-RNA interaction amino acids using random forest based on submodularity subset selection. 324-330 - Jie Tang, Keru Hua, Mengye Chen, Ruiming Zhang, Xiaoli Xie:
A novel k-word relative measure for sequence comparison. 331-338
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