Biosystems, Volume 198

Volume 198, December 2020

Computational approaches in cancer modeling

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  Shreya Bhattacharya, Pragati Prasad Sah, Arundhati Banerjee, Sujay Ray:
  Structural impact due to PPQEE deletion in multiple cancer associated protein - Integrin αV: An In silico exploration. 104216

Regular Papers

• 
  Yuan Li, Zuqing Hu, Zhen Li, Yanyan Kong, M. K. D. K. Piyaratne, Bailing Wang, Huiyan Zhao:
  Generalized population dynamics model of aphids in wheat based on catastrophe theory. 104217
• 
  V. Sivakumar, N. Janakiraman:
  A novel method for segmenting brain tumor using modified watershed algorithm in MRI image with FPGA. 104226
• 
  Soumyadip Banerjee, Kushal Shah, Shaunak Sen:
  On the length scale dependence of DNA conformational change under local perturbation. 104228

Evolutionary dynamics of social systems

• 
  Ilya Ilyin, Leonid Issaev, Sergey Malkov:
  A methodology for analyzing and forecasting sociopolitical destabilization. 104229

Regular Papers

• 
  Mibaile Justin, Slobodan Zdravkovic, Malwe Boudoue Hubert, Betchewe Gambo, Serge Doka Yamigno, Timoléon Crépin Kofané:
  Chaotic vibration of microtubules and biological information processing. 104230

Evolutionary dynamics of social systems

• 
  Sergey Malkov, Kira Meshcherina, Andrey Korotayev:
  Evolution of stability of socioeconomic system functioning: Some approaches to modeling (with an application to the case of Egypt, 2011-2013). 104231

Regular Papers

• 
  Anqi Zhou, Xijun Liu, Suxia Zhang, Bing Huo:
  Effects of store-operated and receptor-operated calcium channels on synchronization of calcium oscillations in astrocytes. 104233
• 
  Alla E. Sidorova, Vsevolod A. Tverdislov, Natalia Levashova, Anastasia Garaeva:
  A model of autowave self-organization as a hierarchy of active media in the biological evolution. 104234
• 
  Alex W. Guoth, Anna Chernyshova, Graham James Thompson:
  Gene-regulatory context of honey bee worker sterility. 104235

Evolutionary dynamics of social systems

• 
  Loet Leydesdorff, Franz Hoegl:
  The evolutionary dynamics of expectations: Interactions among codes in inter-human communications. 104236
• 
  John E. Stewart:
  Towards a general theory of the major cooperative evolutionary transitions. 104237

Regular Papers

• 
  Hiroyuki Hamada, Satoshi Kurinomaru, Shogo Ohitokata, Yakun Yang, Kenta Asamura, Mari Deguchi, Yohei Motomura, Akiyuki Iwasaki, Tatsuya Sekiguchi, Taizo Hanai, Masahiro Okamoto:
  Mathematical analysis-based feasibility study of pre-emptive medicine for Staphylococcus aureus infectious disease: Early detection and antibiotic-free maintenance therapy. 104238

Symbiogenesis and Progressive Evolution

• 
  Massimo Di Giulio:
  LUCA as well as the ancestors of archaea, bacteria and eukaryotes were progenotes: Inference from the distribution and diversity of the reading mechanism of the AUA and AUG codons in the domains of life. 104239

Review Article

• 
  Vladimir P. Zhdanov, Bengt Kasemo:
  Virions and respiratory droplets in air: Diffusion, drift, and contact with the epithelium. 104241

Evolutionary dynamics of social systems

• 
  Yagmur Denizhan:
  Evolution of the mental model: From archaic myths to modern myths. 104242

Regular Papers

• 
  Alessandro Ravoni:
  Impact of composition on the dynamics of autocatalytic sets. 104250
• 
  S. Arbabi Moghadam, Jordane Preto, Mariusz Klobukowski, Jack A. Tuszynski:
  Testing amino acid-codon affinity hypothesis using molecular docking. 104251
• 
  Nicolas Bajeux, Bapan Ghosh:
  Stability switching and hydra effect in a predator-prey metapopulation model. 104255
• 
  Alexander E. Vinogradov, Olga V. Anatskaya:
  Systemic evolutionary changes in mammalian gene expression. 104256

Evolutionary dynamics of social systems

• 
  Luke Glowacki:
  The emergence of locally adaptive institutions: Insights from traditional social structures of East African pastoralists. 104257

Short Communications

• 
  Matias Fernando Gerard, Raúl N. Comelli:
  PhDSeeker: Pheromone-Directed Seeker for metabolic pathways. 104259

Hypothesis

• 
  Miguel Angel Freire:
  Phosphorylation and acylation transfer reactions: Clues to a dual origin of metabolism. 104260

Computational approaches in cancer modeling

• 
  Rafael Lahoz-Beltra, R. Juárez Rodriguez:
  Modeling a cancerous tumor development in a virtual patient suffering from a depressed state of mind: Simulation of somatic evolution with a customized genetic algorithm. 104261

Regular Papers

• 
  Kentaro Inoue:
  Feedback enrichment analysis for transcription factor-target genes in signaling pathways. 104262

Evolutionary dynamics of social systems

• 
  Pedro C. Marijuán, Abir U. Igamberdiev:
  The evolutionary dynamics of social systems - Looking for a new dialog. 104263
• 
  Stephen J. Cowley, Anneliese Kuhle:
  The rise of languaging. 104264

Book Review

• 
  Ephraim S. P. Lansky:
  Peter Sterling's What is Health? Allostasis and the Evolution of Human Design, MIT Press, Cambridge, Massachusetts (2020), 225 pp., hardcover. 104265

Evolutionary dynamics of social systems

• 
  Majid Davoody Beni:
  An integrative explanation of action. 104266

Regular Papers

• 
  Ricardo Jorge Pais:
  Simulation of multiple microenvironments shows a pivot role of RPTPs on the control of Epithelial-to-Mesenchymal Transition. 104268
• 
  Bo-Ren Chen, Chao-Xuan You, Che-Chi Shu:
  The common misuse of noise decomposition as applied to genetic systems. 104269
• 
  Vladimír Smolka, Jan Drastík, Jaroslav Bradík, Max H. Garzon, Petr Sosík:
  Morphogenetic systems: Models and experiments. 104270

Evolutionary dynamics of social systems

• 
  Kazuto Sasai:
  Asynchronous time-space model for evolutionary market. 104272

Regular Papers

• 
  Sergey V. Petoukhov:
  Hyperbolic rules of the cooperative organization of eukaryotic and prokaryotic genomes. 104273
• 
  Xiaomeng Zhang, Ket Hing Chong, Lin Zhu, Jie Zheng:
  A Monte Carlo method for in silico modeling and visualization of Waddington's epigenetic landscape with intermediate details. 104275
• 
  Yufang Huang, Yong Xu:
  Implementing logical inference based on DNA assembly. 104276
• 
  Kouhei Hattori, Takeshi Hayakawa, Akira Nakanishi, Mihoko Ishida, Hideaki Yamamoto, Ayumi Hirano-Iwata, Takashi Tanii:
  Contribution of AMPA and NMDA receptors in the spontaneous firing patterns of single neurons in autaptic culture. 104278

Foundations of Mathematics and Theoretical Biology

• 
  Giuseppe Iurato, Abir U. Igamberdiev:
  D'Arcy W. Thompson's On Growth and Form: A landmark for the mathematical foundations of epigenetics. 104279

Regular Papers

• 
  Bagayalakshmi Karuna Nidhi Muthugobal, Ganapathy Ramesh, Subbiah Parthasarathy, Suvaiyarasan Suvaithenamudhan, Karuppasamy Muthuvel Prasath:
  Gray code representation of the universal genetic code: Generation of never born protein sequences using Toeplitz matrix approach. 104280
• 
  Archana Ojha, Nilesh Kumar Thakur:
  Exploring the complexity and chaotic behavior in plankton-fish system with mutual interference and time delay. 104283
• 
  Zühra Çimen, Nimet Korkmaz, Yasemin Altuncu, Recai Kiliç:
  Evaluating the effectiveness of several synchronization control methods applying to the electrically and the chemically coupled hindmarsh-rose neurons. 104284

Waves in Fertilization, Cell Division and Embryogenesis

• 
  Alexey G. Desnitskiy:
  Surface contraction waves or cell proliferation waves in the presumptive neurectoderm during amphibian gastrulation: Mexican axolotl versus African clawed frog. 104286