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ORCIDComputer Applications in the Biosciences, Volume 5
Volume 5, Number 1, February 1989
- T. Charles Hodgman:
The elucidation of protein function by sequence motif analysis. 1-13 - R. Stulich, K. Rohde:
EMBOPRO--an automatically generated protein sequence database. 15-18 - G. H. Dibdin:
A simple add-on algorithm to extend one-dimensional finite difference diffusion calculations to include charge coupling. 19-26 - Panagiotis A. Tsonis, Anastasios A. Tsonis:
Chaos: principles and implications in biology. 27-32 - Stefano Volinia
, Roberto Gambari, F. Bernardi, Italo Barrai:
The frequency of oligonucleotides in mammalian genic regions. 33-40 - S. Sjoberg, P. Carlsson, S. Enerback, G. Bjursell:
A compact, flexible and cheap system for acquiring sequence data from autoradiograms with a digitizer and transferring it to an arbitrary host computer. 41-46 - José L. Oliver, A. Marin, Juan-Ramón Medina:
SDSE: a software package to simulate the evolution of a pair of DNA sequences. 47-50 - William Bains:
MULTAN (2), a multiple string alignment program for nucleic acids and proteins. 51-52 - Stefano Pascarella, Francesco Bossa:
CLEAVAGE: a microcomputer program for predicting signal sequence cleavage sites. 53-54 - J. L. Micol:
A computer program for the generation of problems in genetics for teaching purposes. 55 - R. Gasperini:
Using Lotus 1-2-3 to determine correlation of linearly related method comparison data. 56-57
Volume 5, Number 2, April 1989
- Rodger Staden:
Methods for calculating the probabilities of finding patterns in sequences. 89-96 - G. Mengeritsky, Temple F. Smith:
New analytical tool for analysis of splice site sequence determinants. 97-100 - John Sulston, Frank Mallett, Richard Durbin, Terry Horsnell:
Image analysis of restriction enzyme fingerprint autoradiograms. 101-106 - Renas Rechid, Martin Vingron, Patrick Argos:
A new interactive protein sequence alignment program and comparison of its results with widely used algorithms. 107-113 - Martin Vingron, P. Argos:
A fast and sensitive multiple sequence alignment algorithm. 115-121 - R. F. Mott, Thomas B. L. Kirkwood, R. N. Curnow:
A test for the statistical significance of DNA sequence similarities for application in databank searches. 123-131 - P. M. Reid, A. E. Wilkinson, K. C. Leung, M. N. Jones:
SED88: a Pascal program for the analysis of sedimentation equilibrium data. 133-135 - T. Brittain:
A BASIC program for the removal of noise from reaction traces using Fourier filtering. 137-140 - C. M. Henneke:
A multiple sequence alignment algorithm for homologous proteins using secondary structure information and optionally keying alignments to functionally important sites. 141-150 - Desmond G. Higgins, P. M. Sharp:
Fast and sensitive multiple sequence alignments on a microcomputer. 151-153 - Judith E. Broom, Peter A. Stockwell, Diana F. Hill:
GELENT: a sequence gel entry program for keyboard and sonic digitizer input. 155-157 - Gilbert Deléage, François F. Clerc, B. Roux:
ANTHEPROT: IBM PC and Apple Macintosh versions. 159-160 - Alessandro Sette, Luciano Adorini, Camillo Mancini, Gino Doria:
A BASIC microcomputer program for data analysis of limiting dilution assays. 161
Volume 5, Number 3, July 1989
- E. B. Moser:
Exploring contingency tables with correspondence analysis. 183-189 - M. P. Weiner, Harold A. Scheraga:
A set of Macintosh computer programs for the design and analysis of synthetic genes. 191-198 - J. Vu Tien Khang:
A FORTRAN subroutine to compute inbreeding and kinship coefficients according to the number of ancestral generations. 199-204 - Shu-Yun Le, John Owens, Ruth Nussinov, Jih-Hsiang Chen, Bruce A. Shapiro, Jacob V. Maizel:
RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. 205-210 - T. A. Thanaraj, Ashok S. Kolaskar, Madhusudhan W. Pandit:
An extension of the graph theoretical approach to predict the secondary structure of large RNAs: the complex of 16S and 23S rRNAs from E. coli as a case study. 211-218 - Modesto Orozco, Rafael Franco:
TEFOOL/2: a program for theoretical drug design on microcomputers. 219-226 - K. Y. Cockwell, I. G. Giles:
Software tools for motif and pattern scanning: program descriptions including a universal sequence reading algorithm. 227-232 - E. L. Cabot, Andrew T. Beckenbach:
Simultaneous editing of multiple nucleic acid and protein sequences with ESEE. 233-234 - R. Dannenfelser, Samuel H. Yalkowsky:
Database for aqueous solubility of nonelectrolytes. 235-236 - J. D. Liu, J. S. Parkinson:
A Macintosh program for drawing circular plasmid maps. 237-238 - Jaroslaw Marszalek, J. Kostrowicki, J. Spychala:
LEHM: a convenient non-linear regression microcomputer program for fitting Michaelis-Menten and Hill models to enzyme kinetic data. 239-240 - Modesto Orozco, F. Javier Luque:
POEAMS: program for outliers elimination in 'anomalous' multidimensional space. 241-242 - A. Zullini, G. Manganelli:
A new computer program for nematode identification. 243-244 - A. Suitsu, Raivo Vilu, U. Jarv:
Programs for reference library managing. 245
Volume 5, Number 4, October 1989
- E. Hamori, G. Varga, J. J. LaGuardia:
HYLAS: program for generating H curves (abstract three-dimensional representations of long DNA sequences). 263-269 - Andrzej Galat:
Analysis of dynamics trajectories of DNA and DNA-drug complexes. 271-278 - Andrzej Galat:
CORGEN: a FORTRAN-77 generator of standard and non-standard DNA helices from the sequence. 279-286 - Jean Thioulouse:
Statistical analysis and graphical display of multivariate data on the Macintosh. 287-292 - Rodger Staden:
Methods for discovering novel motifs in nucleic acid sequences. 293-298 - Antonio Facchiano, Francesco Facchiano, R. Ragone, Giovanni Colonna:
FAST (Flexible Analysis by Software Tool) and CHAMP (CHemico-physical AMinoacidic Parameter data bank): a new tool to investigate protein structure. 299-303 - Jordi Bermudez, Daniel López, Joaquim Valls, Jorge Wagensberg:
On the analysis of microbiological processes by Monte Carlo simulation techniques. 305-312 - G. J. King:
ELBAMAP: software for management of electrophoresis banding patterns. 313-317 - Stefano Pascarella, Francesco Bossa:
PRONET: a microcomputer program for predicting the secondary structure of proteins with a neural network. 319-320 - Arati Roy, Tushar Kanti Roy:
A database management system for recombinant DNA clones and hosts for use in IBM personal computers. 321-322 - Kenneth Andrew Sikaris, E. Minasian, Simon Joshua Leach, R. Flegg:
Computer program designed to predict and plot the secondary structure of proteins. 323
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