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ORCIDComputer Applications in the Biosciences, Volume 4
Volume 4, Number 1, March 1988
- R. E. Carhart, H. D. Cash, J. F. Moore:
StrateGene: object-oriented programming in molecular biology. 3-9 - Eugene W. Myers, Webb Miller:
Optimal alignments in linear space. 11-17 - Gad M. Landau, Uzi Vishkin, Ruth Nussinov
:
Locating alignments with k differences for nucleotide and amino acid sequences. 19-24 - C. B. Lawrence, D. A. Goldman:
Definition and identification of homology domains. 25-33 - J. D. Hall, Eugene W. Myers:
A software tool for finding locally optimal alignments in protein and nucleic acid sequences. 35-40 - Samuel Karlin, Macdonald Morris, G. Ghandour, Ming-Ying Leung:
Algorithms for identifying local molecular sequence features. 41-51 - Rodger Staden:
Methods to define and locate patterns of motifs in sequences. 53-60 - Michael Gribskov, M. Homyak, J. Edenfield, David S. Eisenberg:
Profile scanning for three-dimensional structural patterns in protein sequences. 61-66 - J. F. Collins, A. F. W. Coulson, A. Lyall:
The significance of protein sequence similarities. 67-71 - John Owens, Devjani Chatterjee, Ruth Nussinov, Andrzej K. Konopka, Jacob V. Maizel:
A fixed-point alignment technique for detection of recurrent and common sequence motifs associated with biological features. 73-77 - Ulrich Grob, Kurt Stüber:
Recognition of ill-defined signals in nucleic acid sequences. 79-88 - Mauno Vihinen:
An algorithm for simultaneous comparison of several sequences. 89-92 - Ulrich Melcher:
A readable and space-efficient DNA sequence representation: application to caulimoviral DNAs. 93-96 - Lloyd Allison, Chut N. Yee:
Restriction site mapping is in separation theory. 97-101 - Pierre Tufféry, Philippe Dessen, C. Mugnier, Serge A. Hazout:
Restriction map construction using a 'complete sentences compatibility' algorithm. 103-110 - Bernard Bellon:
Construction of restriction maps. 111-115 - Trevor I. Dix, Dorota H. Kieronska:
Errors between sites in restriction site mapping. 117-123 - John Sulston, Frank Mallett, Rodger Staden, Richard Durbin, Terry Horsnell, Alan Coulson:
Software for genome mapping by fingerprinting techniques. 125-132 - Wilma K. Olson, Annankoil R. Srinivasan:
The translation of DNA primary base sequence into three-dimensional structure. 133-142 - Robert Cedergren, Daniel Gautheret, Guy Lapalme, François Major:
A secondary and tertiary structure editor for nucleic acids. 143-146 - Robert K.-Z. Tan, M. Prabhakaran, C. S. Tung, Stephen C. Harvey:
AUGUR: a program to predict, display and analyze the tertiary structure of B-DNA. 147-151 - Shu-Yun Le, Jih-Hsiang Chen, Kathleen M. Currey, Jacob V. Maizel:
A program for predicting significant RNA secondary structures. 153-159 - J. L. Modelevsky, T. G. Akers:
Reiterative RNA folding and occupancy rate analysis for mRNA modelling. 161-166 - Robert E. Bruccoleri, Gerhard Heinrich:
An improved algorithm for nucleic acid secondary structure display. 167-173 - R. J. Folz, J. I. Gordon:
PARA-SITE: a computer algorithm for rapidly analyzing the physical- chemical properties of amino acid sequences at sites of co- and post- translational protein processing. 175-179 - B. A. Jameson, H. Wolf:
The antigenic index: a novel algorithm for predicting antigenic determinants. 181-186 - Hans Wolf, Susanne Modrow, Manfred Motz, Bradford A. Jameson, G. Hermann, B. Förtsch:
An integrated family of amino acid sequence analysis programs. 187-191 - D. Shalloway, S. F. Sneddon, E. K. Little:
Microcomputer-based three-dimensional stereoscopic macromolecular graphics display. 193-196 - J. A. Bossinger:
The Annotator's Assistant: an expert system for direct submission of genetic sequence data. 197-202 - Thomas P. Keenan, Stephen A. Krawetz:
Computer video acquisition and analysis system for biological data. 203-210 - Ken M. Williams:
Version 5 of the Mount-Conrad-Myers Sequence Analysis Software Package now available. 211 - D. W. Smith:
A complete, yet flexible, system for DNA/protein sequence analysis using VAX/VMS computers. 212 - T. Friedemann:
Alignment of multiple DNA and protein sequence data. 213-214 - José Campione-Piccardo, Ricardo Moro:
Modification of DNA ends and detection of restriction enzyme recognition sequences in their ligated junctions. 215-216 - Edmond J. Breen, Lois H. Browne, Len Glue, Keith L. Williams:
The DNA rodent: a portable hand held DNA sequence reader. 217 - H. B. Jenson:
Enhancement of DNA sequence computer programs by using digitized voice output. 218-232
Volume 4, Number 2, April 1988
- E. B. Moser, A. M. Saxton, J. P. Geaghan:
Biological applications of the SAS system: an overview. 233-238 - G. F. Griffin, G. N. Bastin:
Hand-held computer program for field-capture and analysis of herbage yield and composition data using a modified dry-weight-rank and yield estimate method. 239-242 - Karl Sirotkin:
A computer program to display codon changes caused by mutagenesis. 243-247 - A. Mynett:
FUGE: an analytical ultracentrifuge simulation for teaching purposes. 249-252 - J. L. Modelevsky, T. G. Akers:
BCE: a tool for software integration. 253-257 - José Campione-Piccardo:
Algorithms for determining the fate of sites and domain boundaries in computer simulations of recombinant DNA procedures. 259-264 - Pasquale Petrilli:
PROSOFT: a general purpose software in protein chemistry. 265-270 - C. D. Porter, A. G. Porter, L. C. Archard:
BBC microcomputer controlled field inversion gel electrophoresis. 271-273 - J. D. Santangelo:
A general purpose computer analysis system for chromatographic data. 275-279 - W. Vanden Berghe, P. Aerts:
A hidden-line algorithm for graphical reconstruction of serially sectioned objects. 281-289 - M. A. Fernandes, P. J. Jackman, S. A. Clark, S. R. Gunard:
Detection and quantification of microorganisms in a heterogeneous foodstuff by image analysis. 291-295 - Jan Mrázek, J. Kypr:
Computer program Jamsek combining statistical and stereochemical rules for the prediction of protein secondary structure. 297-302 - Francesco Facchiano, Antonio Facchiano, R. Ragone, Giovanni Colonna:
New graphic representation of structural parameters of proteins. 303-305 - Joaquín Dopazo:
Reducing the effect of the data order in algorithms for constructing phylogenetic trees. 307 - J. L. Modelevsky, T. G. Akers:
3-D multi-variate data display tool as a protein design aid. 308 - Joachim Mandler:
HYSTRUC: hydropathy and secondary structure prediction. 309 - Joachim Mandler:
BETRA: a helpful tool for Beckman Microgenie users. 310-330
Volume 4, Number 3, August 1988
- G. W. Kidder III:
Resolution improvement by modulation of analog-to-digital converters. 331-335 - Shu-Yun Le, Jih-Hsiang Chen, Ruth Nussinov, Jacob V. Maizel:
An improved secondary structure computation method and its application to intervening sequence in the human alpha-likeglobin mRNA precursors. 337-344 - D. R. Boswell:
A program for template matching of protein sequences. 345-350 - Gilbert Deléage, François F. Clerc, B. Roux, D. C. Gautheron:
ANTHEPROT: a package for protein sequence analysis using a microcomputer. 351-356 - Olivier Gascuel, J. L. Golmard:
A simple method for predicting the secondary structure of globular proteins: implications and accuracy. 357-365 - Kotoko Nakata, Minoru Kanehisa, Jacob V. Maizel:
Discriminant analysis of promoter regions in Escherichia coli sequences. 367-371 - R. P. Shellis:
A microcomputer program to evaluate the saturation of complex solutions with respect to biominerals. 373-379 - Modesto Orozco, F. Javier Luque:
POEMS: program for outliers elimination in multidimensional space. 381-385 - Bruce A. Shapiro:
An algorithm for comparing multiple RNA secondary structures. 387-393 - A. H. Reisner, Carolyn A. Bucholtz:
The use of various properties of amino acids in color and monochrome dot-matrix analyses for protein homologies. 395-402 - A. Fielding:
Matrix algebra routines for the Acorn Archimedes microcomputer: example applications. 403-404 - A. M. Popowicz, P. F. Dash:
SIGSEQ: a computer program for predicting signal sequence cleavage sites. 405-406 - Christiane Bergmann, Rolf Bergmann:
SCATTER: a program to correct UV spectra recorded with an LKB Ultrospec interfaced to an Apple IIe for light scattering by particles or aggregates. 407 - Judith M. Smith:
CELLBASE: a database management system for the control of cell line storage. 408-430
Volume 4, Number 4, November 1988
- A. Jimenez-Sanchez, E. C. Guzman:
Direct procedure for the determination of the number of replication forks and the reinitiation fraction in bacteria. 431-433 - M. Equihua:
Analysis of finite mixture of distributions: a statistical tool for biological classification problems. 435-440 - Philip Taylor:
A program for drawing evolutionary trees. 441-443 - François Major, R. Feldmann, Guy Lapalme, Robert Cedergren:
FUS: a system to simulate conformational changes in biological macromolecules. 445-451 - Marie-Odile Delorme, Alain Hénaut:
Merging of distance matrices and classification by dynamic clustering. 453-458 - R. Smith:
A finite state machine algorithm for finding restriction sites and other pattern matching applications. 459-465 - K. Tajima:
Multiple DNA and protein sequence alignment on a workstation and a supercomputer. 467-471 - Stavros J. Hamodrakas:
A protein secondary structure prediction scheme for the IBM PC and compatibles. 473-477 - L. Menendez-Arias, J. Gomez-Gutierrez, M. Garcia-Ferrandez, A. Garcia-Tejedor, F. Moran:
A BASIC microcomputer program to calculate the secondary structure of proteins from their circular dichroism spectrum. 479-482 - F. Dardel, P. Bensoussan:
DNAid: a Macintosh full screen editor featuring a built-in regular expression interpreter for the search of specific patterns in biological sequences using finite state automata. 483-486 - Robert J. Beynon:
A Macintosh Hypercard stack for calculation of thermodynamically- corrected buffer recipes. 487-490 - William Bains:
AXE: a program for isolating short segments of long DNA sequences. 491-492 - Joachim Mandler:
ANTIGEN: protein surface residue prediction. 493
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